JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM239_chr20_2811364_2823062	0/0	a0005	152	1	0	0	0	0	1	copy fasta	TMEM239	chr20	2811364	2823062
TMEM240_chr1_1529778_1545624	1/1	a0001	173	420	92	85	179	15	47	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	a0002	173	4	0	1	0	1	2	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	a0003	173	2	2	0	0	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	a0004	173	1	0	0	0	0	1	copy fasta	TMEM240	chr1	1529778	1545624
TMEM240_chr1_1529778_1545624	0/0	a0005	173	1	0	0	1	0	0	copy fasta	TMEM240	chr1	1529778	1545624
TMEM241_chr18_23291013_23442961	1/0	a0001	296	210	41	45	89	8	26	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/1	a0002	296	121	30	21	51	6	12	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	a0003	296	6	6	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	a0004	296	2	2	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM241_chr18_23291013_23442961	0/0	a0005	296	1	1	0	0	0	0	copy fasta	TMEM241	chr18	23291013	23442961
TMEM242_chr6_157284025_157328519	1/1	a0001	141	325	76	60	135	10	42	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	a0002	141	17	16	1	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	a0003	141	1	0	0	1	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM242_chr6_157284025_157328519	0/0	a0004	141	1	0	1	0	0	0	copy fasta	TMEM242	chr6	157284025	157328519
TMEM243_chr7_87191160_87224732	1/1	a0001	118	397	91	68	190	14	32	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	a0002	118	1	1	0	0	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	a0003	118	1	0	0	1	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM243_chr7_87191160_87224732	0/0	a0004	118	1	0	0	1	0	0	copy fasta	TMEM243	chr7	87191160	87224732
TMEM244_chr6_129826244_129866315	0/1	a0001	128	155	50	16	61	5	22	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	1/0	a0002	128	154	30	32	73	3	15	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	a0003	128	71	8	23	25	4	11	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	a0004	128	4	4	0	0	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	a0005	128	1	0	0	1	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	a0006	128	1	0	1	0	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	a0007	128	1	0	0	1	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM244_chr6_129826244_129866315	0/0	a0008	128	1	0	0	1	0	0	copy fasta	TMEM244	chr6	129826244	129866315
TMEM245_chr9_109010135_109124947	1/1	a0001	879	270	64	45	123	5	31	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	a0002	879	75	0	23	43	4	5	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	a0003	879	40	22	4	0	3	11	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	a0004	879	31	0	0	30	0	1	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	a0005	879	2	0	0	2	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	a0006	879	2	2	0	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	a0007	879	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM245_chr9_109010135_109124947	0/0	a0008	879	1	0	1	0	0	0	copy fasta	TMEM245	chr9	109010135	109124947
TMEM248_chr7_66916225_66963551	1/1	a0001	314	394	73	66	195	16	42	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	a0002	314	2	0	0	2	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	a0003	314	1	1	0	0	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM248_chr7_66916225_66963551	0/0	a0004	314	1	0	0	1	0	0	copy fasta	TMEM248	chr7	66916225	66963551
TMEM249_chr8_144348228_144359931	1/1	a0001	235	367	92	66	151	16	40	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	a0002	235	6	4	2	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	a0003	235	1	0	0	1	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	a0004	239	1	1	0	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM249_chr8_144348228_144359931	0/0	a0005	235	1	1	0	0	0	0	copy fasta	TMEM249	chr8	144348228	144359931
TMEM250_chr9_136109589_136123875	1/1	a0001	139	434	98	78	190	18	48	copy fasta	TMEM250	chr9	136109589	136123875
TMEM252_chr9_68531580_68545883	1/1	a0001	170	422	94	72	194	18	42	copy fasta	TMEM252	chr9	68531580	68545883
TMEM253_chr14_21096066_21108724	1/1	a0001	217	393	89	72	170	12	48	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	a0002	217	2	1	1	0	0	0	copy fasta	TMEM253	chr14	21096066	21108724
TMEM253_chr14_21096066_21108724	0/0	a0003	217	1	0	1	0	0	0	copy fasta	TMEM253	chr14	21096066	21108724
TMEM254_chr10_80073665_80097551	1/1	a0001	123	389	91	70	176	8	42	copy fasta	TMEM254	chr10	80073665	80097551