JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM254_chr10_80073665_80097551	0/0	a0002	123	1	1	0	0	0	0	copy fasta	TMEM254	chr10	80073665	80097551
TMEM255A_chrX_120253650_120316461	1/1	a0001	325	301	74	54	133	9	29	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	a0002	325	1	0	0	0	0	1	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255A_chrX_120253650_120316461	0/0	a0003	82	1	0	0	1	0	0	copy fasta	TMEM255A	chrX	120253650	120316461
TMEM255B_chr13_113754226_113821995	1/0	a0001	326	210	40	53	79	9	28	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/1	a0002	198	36	25	5	0	3	2	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	a0003	326	4	0	4	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	a0004	326	3	0	0	0	0	3	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	a0005	326	2	2	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	a0006	326	2	2	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	a0007	326	1	1	0	0	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	a0008	176	1	0	0	0	0	1	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM255B_chr13_113754226_113821995	0/0	a0009	326	1	0	0	1	0	0	copy fasta	TMEM255B	chr13	113754226	113821995
TMEM256_chr17_7397975_7409097	1/1	a0001	113	390	93	81	158	14	42	copy fasta	TMEM256	chr17	7397975	7409097
TMEM256_chr17_7397975_7409097	0/0	a0002	113	8	7	1	0	0	0	copy fasta	TMEM256	chr17	7397975	7409097
TMEM258_chr11_61783949_61797599	1/1	a0001	79	330	92	62	124	18	32	copy fasta	TMEM258	chr11	61783949	61797599
TMEM259_chr19_1004653_1026123	1/1	a0001	620	385	95	78	154	15	41	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0002	620	20	0	0	17	0	3	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0003	620	12	2	0	2	3	5	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0004	620	4	0	0	4	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0005	620	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0006	620	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0007	620	1	0	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0008	620	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0009	620	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0010	620	1	1	0	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0011	620	1	0	0	1	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0012	620	1	0	1	0	0	0	copy fasta	TMEM259	chr19	1004653	1026123
TMEM259_chr19_1004653_1026123	0/0	a0013	620	1	0	0	0	0	1	copy fasta	TMEM259	chr19	1004653	1026123
TMEM25_chr11_118526192_118540829	1/1	a0001	366	269	76	65	88	9	29	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0002	366	119	19	6	74	1	19	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0003	366	4	0	0	4	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0004	366	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0005	366	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0006	366	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0007	366	1	0	0	1	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0008	266	1	0	1	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM25_chr11_118526192_118540829	0/0	a0009	366	1	1	0	0	0	0	copy fasta	TMEM25	chr11	118526192	118540829
TMEM260_chr14_56574798_56654515	0/0	a0001	707	233	60	33	108	8	24	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	1/1	a0002	707	88	14	15	47	1	9	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0003	707	24	6	8	1	3	6	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0004	707	7	5	2	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0005	707	2	1	1	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0006	707	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0007	707	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0008	707	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0009	707	1	0	1	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0010	707	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0011	707	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0012	707	1	0	0	0	0	1	copy fasta	TMEM260	chr14	56574798	56654515