JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM260_chr14_56574798_56654515	0/0	a0013	707	1	1	0	0	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0014	707	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM260_chr14_56574798_56654515	0/0	a0015	707	1	0	0	1	0	0	copy fasta	TMEM260	chr14	56574798	56654515
TMEM262_chr11_65083376_65094110	0/0	a0001	116	284	88	41	111	8	36	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/1	a0002	116	91	4	32	38	8	8	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	1/0	a0003	116	4	3	0	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	a0004	116	1	0	0	1	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	a0005	116	1	1	0	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM262_chr11_65083376_65094110	0/0	a0006	116	1	0	1	0	0	0	copy fasta	TMEM262	chr11	65083376	65094110
TMEM263_chr12_106950907_106979035	1/1	a0001	116	384	82	65	185	14	36	copy fasta	TMEM263	chr12	106950907	106979035
TMEM263_chr12_106950907_106979035	0/0	a0002	116	6	0	3	3	0	0	copy fasta	TMEM263	chr12	106950907	106979035
TMEM265_chr16_30735642_30750196	1/1	a0001	108	284	86	62	86	12	36	copy fasta	TMEM265	chr16	30735642	30750196
TMEM266_chr15_76054985_76209963	1/1	a0001	523	170	66	28	52	7	15	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	a0002	523	101	18	22	48	5	8	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	a0003	523	1	1	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	a0004	523	1	1	0	0	0	0	copy fasta	TMEM266	chr15	76054985	76209963
TMEM266_chr15_76054985_76209963	0/0	a0005	523	1	0	0	0	0	1	copy fasta	TMEM266	chr15	76054985	76209963
TMEM267_chr5_43439252_43488865	1/1	a0001	215	332	82	68	124	14	42	copy fasta	TMEM267	chr5	43439252	43488865
TMEM267_chr5_43439252_43488865	0/0	a0002	215	2	2	0	0	0	0	copy fasta	TMEM267	chr5	43439252	43488865
TMEM268_chr9_114606291_114651422	1/1	a0001	342	396	85	75	178	14	42	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	a0002	342	3	3	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	a0003	342	2	2	0	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	a0004	342	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	a0005	342	1	0	1	0	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	a0006	342	1	0	0	0	0	1	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	a0007	342	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM268_chr9_114606291_114651422	0/0	a0008	342	1	0	0	1	0	0	copy fasta	TMEM268	chr9	114606291	114651422
TMEM269_chr1_42779991_42805827	1/1	a0001	203	402	83	69	188	14	46	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	a0002	203	5	5	0	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM269_chr1_42779991_42805827	0/0	a0003	36	3	2	1	0	0	0	copy fasta	TMEM269	chr1	42779991	42805827
TMEM26_chr10_61401642_61458381	1/1	a0001	368	353	88	65	150	12	36	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	a0002	61	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	a0003	368	1	0	0	0	0	1	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	a0004	368	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	a0005	368	1	1	0	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM26_chr10_61401642_61458381	0/0	a0006	368	1	0	1	0	0	0	copy fasta	TMEM26	chr10	61401642	61458381
TMEM270_chr7_73856159_73870890	1/0	a0001	265	162	56	29	55	3	18	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/1	a0002	265	154	20	35	77	3	18	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0003	265	16	7	0	3	2	4	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0004	265	8	2	6	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0005	265	6	0	3	1	0	2	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0006	265	4	0	0	0	0	4	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0007	265	3	1	1	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0008	265	2	0	2	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0009	265	2	1	1	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0010	77	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0011	265	1	0	1	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0012	265	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0013	265	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0014	265	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890