JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM270_chr7_73856159_73870890	0/0	a0015	265	1	1	0	0	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0016	265	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0017	265	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM270_chr7_73856159_73870890	0/0	a0018	265	1	0	0	1	0	0	copy fasta	TMEM270	chr7	73856159	73870890
TMEM271_chr4_568880_581295	0/0	a0000	0	1	0	0	0	0	1	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	1/1	a0001	385	324	76	57	150	11	28	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	a0002	377	11	4	1	5	0	1	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	a0003	393	10	2	2	3	1	2	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	a0004	385	2	0	0	2	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	a0005	381	2	2	0	0	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	a0006	385	1	0	0	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM271_chr4_568880_581295	0/0	a0007	385	1	0	0	1	0	0	copy fasta	TMEM271	chr4	568880	581295
TMEM272_chr13_51808347_51850177	1/1	a0001	187	427	95	86	178	18	48	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	a0002	187	3	0	0	3	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	a0003	187	1	1	0	0	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM272_chr13_51808347_51850177	0/0	a0004	187	1	0	0	1	0	0	copy fasta	TMEM272	chr13	51808347	51850177
TMEM273_chr10_49149736_49193391	1/1	a0001	129	323	77	69	123	15	37	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	a0002	129	16	14	2	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	a0003	129	14	1	0	13	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	a0004	129	6	0	1	0	3	2	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	a0005	129	2	2	0	0	0	0	copy fasta	TMEM273	chr10	49149736	49193391
TMEM273_chr10_49149736_49193391	0/0	a0006	129	1	0	0	0	0	1	copy fasta	TMEM273	chr10	49149736	49193391
TMEM275_chr1_46527166_46540515	0/0	a0000	0	3	0	2	1	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	1/1	a0001	177	425	94	70	196	15	48	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	a0002	177	2	2	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	a0003	32	1	0	0	1	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	a0004	172	1	1	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	a0005	177	1	0	0	0	1	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM275_chr1_46527166_46540515	0/0	a0006	177	1	1	0	0	0	0	copy fasta	TMEM275	chr1	46527166	46540515
TMEM276_chr8_144458825_144470492	1/1	a0001	192	400	92	78	175	13	40	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	a0002	192	5	0	0	5	0	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM276_chr8_144458825_144470492	0/0	a0003	192	3	0	2	0	1	0	copy fasta	TMEM276	chr8	144458825	144470492
TMEM30A_chr6_75247924_75289792	1/1	a0001	361	281	84	39	112	10	34	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30A_chr6_75247924_75289792	0/0	a0002	361	1	0	1	0	0	0	copy fasta	TMEM30A	chr6	75247924	75289792
TMEM30B_chr14_61272370_61286338	1/1	a0001	351	424	84	71	213	16	38	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	a0002	351	14	13	1	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	a0003	351	4	0	4	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	a0004	351	3	0	0	3	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	a0005	351	1	1	0	0	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	a0006	351	1	0	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM30B_chr14_61272370_61286338	0/0	a0007	351	1	0	0	1	0	0	copy fasta	TMEM30B	chr14	61272370	61286338
TMEM31_chrX_103705909_103719032	1/1	a0001	168	309	67	60	143	9	28	copy fasta	TMEM31	chrX	103705909	103719032
TMEM31_chrX_103705909_103719032	0/0	a0002	168	5	5	0	0	0	0	copy fasta	TMEM31	chrX	103705909	103719032
TMEM33_chr4_41930429_41965803	1/1	a0001	247	196	84	46	29	6	29	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	a0002	247	1	0	0	0	0	1	copy fasta	TMEM33	chr4	41930429	41965803
TMEM33_chr4_41930429_41965803	0/0	a0003	247	1	0	0	1	0	0	copy fasta	TMEM33	chr4	41930429	41965803
TMEM35A_chrX_101073879_101101367	1/1	a0001	167	321	78	57	139	11	34	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35A_chrX_101073879_101101367	0/0	a0002	140	1	0	0	1	0	0	copy fasta	TMEM35A	chrX	101073879	101101367
TMEM35B_chr1_34976380_34990347	1/1	a0001	154	394	85	65	192	14	36	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM35B_chr1_34976380_34990347	0/0	a0002	154	17	14	1	0	0	2	copy fasta	TMEM35B	chr1	34976380	34990347