JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM35B_chr1_34976380_34990347	0/0	a0003	154	1	1	0	0	0	0	copy fasta	TMEM35B	chr1	34976380	34990347
TMEM37_chr2_119426854_119443504	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	a0001	192	371	84	63	173	15	36	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	1/1	a0002	190	50	4	14	20	1	9	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	a0003	192	5	4	1	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	a0004	192	2	2	0	0	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	a0005	44	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	a0006	192	1	0	0	0	0	1	copy fasta	TMEM37	chr2	119426854	119443504
TMEM37_chr2_119426854_119443504	0/0	a0007	152	1	0	0	1	0	0	copy fasta	TMEM37	chr2	119426854	119443504
TMEM38A_chr19_16656139_16695023	1/1	a0001	299	327	92	60	126	10	37	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	a0002	299	3	1	2	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	a0003	299	1	0	0	0	0	1	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38A_chr19_16656139_16695023	0/0	a0004	299	1	1	0	0	0	0	copy fasta	TMEM38A	chr19	16656139	16695023
TMEM38B_chr9_105689541_105781629	1/1	a0001	291	346	83	66	164	6	25	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	a0002	291	8	8	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	a0003	291	1	1	0	0	0	0	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM38B_chr9_105689541_105781629	0/0	a0004	291	1	0	0	0	0	1	copy fasta	TMEM38B	chr9	105689541	105781629
TMEM39A_chr3_119423949_119468615	1/1	a0001	488	376	84	66	168	13	43	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	a0002	488	20	2	3	9	1	5	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	a0003	488	2	2	0	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	a0004	488	1	0	1	0	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39A_chr3_119423949_119468615	0/0	a0005	488	1	0	0	1	0	0	copy fasta	TMEM39A	chr3	119423949	119468615
TMEM39B_chr1_32067939_32107863	1/1	a0001	492	334	86	62	139	10	35	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	a0002	492	1	0	0	1	0	0	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM39B_chr1_32067939_32107863	0/0	a0003	492	1	0	0	0	0	1	copy fasta	TMEM39B	chr1	32067939	32107863
TMEM40_chr3_12728528_12764259	1/1	a0001	233	335	91	68	126	12	36	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	a0002	233	6	6	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	a0003	233	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	a0004	233	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM40_chr3_12728528_12764259	0/0	a0005	233	1	1	0	0	0	0	copy fasta	TMEM40	chr3	12728528	12764259
TMEM41A_chr3_185484601_185504035	1/1	a0001	264	391	89	72	170	14	44	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	a0002	264	2	0	0	0	2	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	a0003	264	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	a0004	264	1	1	0	0	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41A_chr3_185484601_185504035	0/0	a0005	264	1	0	0	1	0	0	copy fasta	TMEM41A	chr3	185484601	185504035
TMEM41B_chr11_9275654_9319593	1/1	a0001	291	334	91	63	120	10	48	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	a0002	291	23	0	2	21	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	a0003	291	12	1	7	4	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM41B_chr11_9275654_9319593	0/0	a0004	291	1	0	0	1	0	0	copy fasta	TMEM41B	chr11	9275654	9319593
TMEM42_chr3_44856912_44870664	1/1	a0001	159	384	98	80	147	14	43	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	a0002	159	1	0	0	1	0	0	copy fasta	TMEM42	chr3	44856912	44870664
TMEM42_chr3_44856912_44870664	0/0	a0003	159	1	0	0	0	0	1	copy fasta	TMEM42	chr3	44856912	44870664
TMEM43_chr3_14120052_14148680	1/0	a0001	400	182	51	41	54	8	27	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/1	a0002	400	142	30	28	62	4	17	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0003	400	65	12	10	42	0	1	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0004	400	3	3	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0005	400	3	3	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0006	400	2	0	0	2	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0007	400	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0008	400	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680