JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BLOC1S3_chr19_45173784_45186800	1/1	a0001	202	420	98	77	188	11	44	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	a0002	202	3	0	0	0	3	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	a0003	202	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	a0004	202	1	1	0	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S3_chr19_45173784_45186800	0/0	a0005	202	1	0	1	0	0	0	copy fasta	BLOC1S3	chr19	45173784	45186800
BLOC1S4_chr4_6711174_6722664	1/1	a0001	217	455	100	78	213	16	46	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	a0002	217	1	0	0	0	0	1	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	a0003	217	1	0	0	0	0	1	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S4_chr4_6711174_6722664	0/0	a0004	217	1	0	0	1	0	0	copy fasta	BLOC1S4	chr4	6711174	6722664
BLOC1S5_chr6_8008567_8069389	1/1	a0001	187	362	91	74	139	12	44	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	a0002	187	1	1	0	0	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S5_chr6_8008567_8069389	0/0	a0003	187	1	0	0	1	0	0	copy fasta	BLOC1S5	chr6	8008567	8069389
BLOC1S6_chr15_45582379_45614708	1/1	a0001	172	360	84	70	158	10	36	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	a0002	172	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLOC1S6_chr15_45582379_45614708	0/0	a0003	172	1	1	0	0	0	0	copy fasta	BLOC1S6	chr15	45582379	45614708
BLTP1_chr4_122147331_122367752	1/1	a0001	5093	269	61	44	121	13	28	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0002	5093	21	0	2	19	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0003	5093	14	13	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0004	5093	4	1	3	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0005	5093	4	0	3	0	1	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0006	5093	3	2	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0007	5093	3	3	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0008	5093	3	3	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0009	5093	3	3	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0010	5093	2	2	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0011	750	2	0	1	0	0	1	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0012	5093	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0013	5093	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0014	5093	1	0	0	0	0	1	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0015	1968	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0016	5093	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0017	5093	1	1	0	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0018	5093	1	0	1	0	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP1_chr4_122147331_122367752	0/0	a0019	5093	1	0	0	1	0	0	copy fasta	BLTP1	chr4	122147331	122367752
BLTP2_chr17_28609446_28650158	1/1	a0001	2235	243	61	54	101	5	20	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0002	2235	48	8	5	29	1	5	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0003	2235	3	3	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0004	2235	3	3	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0005	2235	2	2	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0006	2235	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0007	2235	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0008	2235	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0009	2235	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0010	2235	1	0	0	0	0	1	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0011	2235	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0012	2235	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0013	2235	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0014	2235	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0015	2235	1	1	0	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158
BLTP2_chr17_28609446_28650158	0/0	a0016	2235	1	0	1	0	0	0	copy fasta	BLTP2	chr17	28609446	28650158