JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM43_chr3_14120052_14148680	0/0	a0009	400	1	0	1	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0010	400	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0011	400	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0012	400	1	1	0	0	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0013	400	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0014	400	1	0	0	0	0	1	copy fasta	TMEM43	chr3	14120052	14148680
TMEM43_chr3_14120052_14148680	0/0	a0015	400	1	0	0	1	0	0	copy fasta	TMEM43	chr3	14120052	14148680
TMEM44_chr3_194582678_194638419	0/1	a0001	428	244	60	51	98	4	30	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0002	428	106	27	17	41	7	14	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	1/0	a0003	428	27	8	8	8	1	1	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0004	428	20	0	2	16	0	2	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0005	428	2	2	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0006	428	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0007	428	1	0	1	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0008	428	1	0	0	1	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0009	428	1	0	0	0	0	1	copy fasta	TMEM44	chr3	194582678	194638419
TMEM44_chr3_194582678_194638419	0/0	a0010	428	1	1	0	0	0	0	copy fasta	TMEM44	chr3	194582678	194638419
TMEM45A_chr3_100487619_100582444	1/1	a0001	275	318	78	64	132	8	34	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45A_chr3_100487619_100582444	0/0	a0002	275	4	4	0	0	0	0	copy fasta	TMEM45A	chr3	100487619	100582444
TMEM45B_chr11_129810848_129865003	1/1	a0001	275	300	36	57	160	14	31	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	a0002	275	84	43	13	23	0	5	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	a0003	275	12	10	2	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	a0004	275	4	4	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	a0005	275	2	2	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	a0006	275	1	0	0	1	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM45B_chr11_129810848_129865003	0/0	a0007	275	1	1	0	0	0	0	copy fasta	TMEM45B	chr11	129810848	129865003
TMEM47_chrX_34622075_34662285	1/1	a0001	181	284	70	51	126	7	28	copy fasta	TMEM47	chrX	34622075	34662285
TMEM47_chrX_34622075_34662285	0/0	a0002	181	1	0	0	1	0	0	copy fasta	TMEM47	chrX	34622075	34662285
TMEM50A_chr1_25333334_25367361	1/1	a0001	157	369	92	68	146	17	44	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	a0002	157	10	0	0	10	0	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50A_chr1_25333334_25367361	0/0	a0003	157	1	0	0	0	1	0	copy fasta	TMEM50A	chr1	25333334	25367361
TMEM50B_chr21_33444141_33484974	0/1	a0001	158	378	92	74	151	18	42	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM50B_chr21_33444141_33484974	0/0	a0002	158	1	0	0	1	0	0	copy fasta	TMEM50B	chr21	33444141	33484974
TMEM51_chr1_15148747_15225478	1/1	a0001	253	292	86	59	91	18	36	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	a0002	253	2	0	0	2	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	a0003	253	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	a0004	253	1	1	0	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	a0005	253	1	0	1	0	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM51_chr1_15148747_15225478	0/0	a0006	253	1	0	0	1	0	0	copy fasta	TMEM51	chr1	15148747	15225478
TMEM52B_chr12_10174032_10196804	1/1	a0001	183	421	88	75	190	18	48	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	a0002	183	3	2	1	0	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	a0003	183	2	0	0	1	0	1	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	a0004	183	2	0	0	2	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	a0005	176	1	0	0	1	0	0	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52B_chr12_10174032_10196804	0/0	a0006	183	1	0	0	0	0	1	copy fasta	TMEM52B	chr12	10174032	10196804
TMEM52_chr1_1912591_1924279	1/0	a0001	209	174	42	32	71	7	21	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/1	a0002	206	103	3	26	55	7	11	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	a0003	209	66	35	7	14	0	10	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	a0004	209	10	3	1	6	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	a0005	206	5	1	0	4	0	0	copy fasta	TMEM52	chr1	1912591	1924279