JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM52_chr1_1912591_1924279	0/0	a0006	206	2	0	0	2	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	a0007	209	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	a0008	215	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	a0009	215	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM52_chr1_1912591_1924279	0/0	a0010	203	1	0	0	1	0	0	copy fasta	TMEM52	chr1	1912591	1924279
TMEM53_chr1_44648247_44679481	1/1	a0001	277	331	85	74	110	18	42	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	a0002	277	4	3	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM53_chr1_44648247_44679481	0/0	a0003	277	1	0	1	0	0	0	copy fasta	TMEM53	chr1	44648247	44679481
TMEM54_chr1_32889595_32906389	1/1	a0001	222	350	95	60	150	10	33	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0002	222	3	0	1	2	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0003	222	2	0	0	0	0	2	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0004	222	2	0	0	2	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0005	222	1	0	0	0	0	1	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0006	222	1	0	1	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0007	222	1	0	0	1	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0008	222	1	1	0	0	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM54_chr1_32889595_32906389	0/0	a0009	222	1	0	0	1	0	0	copy fasta	TMEM54	chr1	32889595	32906389
TMEM59L_chr19_18607870_18626039	1/1	a0001	342	401	92	69	182	12	44	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	a0002	342	2	0	0	2	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	a0003	342	2	0	0	2	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	a0004	342	1	0	1	0	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	a0005	175	1	0	0	1	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59L_chr19_18607870_18626039	0/0	a0006	342	1	0	0	1	0	0	copy fasta	TMEM59L	chr19	18607870	18626039
TMEM59_chr1_54021681_54058204	1/1	a0001	323	360	94	54	166	6	38	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	a0002	323	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM59_chr1_54021681_54058204	0/0	a0003	323	1	0	1	0	0	0	copy fasta	TMEM59	chr1	54021681	54058204
TMEM60_chr7_77788728_77803434	1/1	a0001	133	400	98	78	156	16	50	copy fasta	TMEM60	chr7	77788728	77803434
TMEM61_chr1_54975628_54997288	1/1	a0001	210	410	90	63	198	16	41	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	a0002	210	15	0	6	7	0	2	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	a0003	210	5	0	0	0	0	5	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	a0004	210	2	2	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	a0005	210	1	0	1	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	a0006	210	1	0	0	1	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	a0007	210	1	1	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM61_chr1_54975628_54997288	0/0	a0008	210	1	1	0	0	0	0	copy fasta	TMEM61	chr1	54975628	54997288
TMEM62_chr15_43128586_43190144	1/1	a0001	643	340	74	58	165	12	29	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	a0002	643	1	0	0	1	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	a0003	643	1	1	0	0	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	a0004	643	1	1	0	0	0	0	copy fasta	TMEM62	chr15	43128586	43190144
TMEM62_chr15_43128586_43190144	0/0	a0005	643	1	0	0	0	0	1	copy fasta	TMEM62	chr15	43128586	43190144
TMEM63A_chr1_225840536_225887380	1/1	a0001	807	282	71	39	126	12	32	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0002	807	66	0	16	37	3	10	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0003	807	37	2	13	19	1	2	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0004	807	13	10	3	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0005	807	10	0	0	10	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0006	807	6	6	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0007	807	2	2	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0008	807	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0009	807	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0010	807	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380