JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM63A_chr1_225840536_225887380	0/0	a0011	807	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0012	807	1	0	1	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0013	807	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0014	807	1	0	0	1	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0015	807	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0016	807	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63A_chr1_225840536_225887380	0/0	a0017	807	1	1	0	0	0	0	copy fasta	TMEM63A	chr1	225840536	225887380
TMEM63B_chr6_44122554_44160519	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	1/1	a0001	832	333	89	64	127	14	37	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	a0002	832	61	1	10	41	1	8	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	a0003	832	3	0	0	0	0	3	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	a0004	832	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	a0005	832	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	a0006	832	1	0	0	1	0	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63B_chr6_44122554_44160519	0/0	a0007	832	1	0	0	0	1	0	copy fasta	TMEM63B	chr6	44122554	44160519
TMEM63C_chr14_77176798_77264495	1/1	a0001	806	313	89	68	104	12	38	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	a0002	806	2	0	2	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	a0003	806	2	2	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	a0004	806	1	1	0	0	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	a0005	806	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	a0006	806	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	a0007	806	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM63C_chr14_77176798_77264495	0/0	a0008	806	1	0	0	1	0	0	copy fasta	TMEM63C	chr14	77176798	77264495
TMEM64_chr8_90617000_90651083	1/1	a0001	380	331	77	65	150	12	25	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	a0002	381	8	8	0	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	a0003	380	8	7	1	0	0	0	copy fasta	TMEM64	chr8	90617000	90651083
TMEM64_chr8_90617000_90651083	0/0	a0004	380	1	0	0	0	0	1	copy fasta	TMEM64	chr8	90617000	90651083
TMEM65_chr8_124301189_124377701	1/1	a0001	240	348	82	56	164	10	34	copy fasta	TMEM65	chr8	124301189	124377701
TMEM67_chr8_93749894_93823121	0/1	a0001	995	202	70	40	66	4	21	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	1/0	a0002	995	110	20	23	45	8	13	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	a0003	995	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	a0004	995	1	0	0	1	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	a0005	995	1	1	0	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	a0006	995	1	0	0	1	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	a0007	995	1	0	0	1	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM67_chr8_93749894_93823121	0/0	a0008	995	1	0	1	0	0	0	copy fasta	TMEM67	chr8	93749894	93823121
TMEM68_chr8_55733758_55778378	1/1	a0001	324	370	91	62	163	10	42	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	a0002	324	1	1	0	0	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM68_chr8_55733758_55778378	0/0	a0003	324	1	0	0	1	0	0	copy fasta	TMEM68	chr8	55733758	55778378
TMEM69_chr1_45683181_45699436	1/1	a0001	247	350	88	66	152	12	30	copy fasta	TMEM69	chr1	45683181	45699436
TMEM69_chr1_45683181_45699436	0/0	a0002	247	2	0	0	0	0	2	copy fasta	TMEM69	chr1	45683181	45699436
TMEM70_chr8_73971195_73987783	1/1	a0001	260	298	62	44	138	15	37	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0002	260	64	13	14	27	1	9	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0003	260	13	0	11	1	0	1	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0004	260	11	10	1	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0005	260	8	1	1	5	0	1	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0006	260	3	3	0	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0007	260	2	1	1	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0008	260	2	0	2	0	0	0	copy fasta	TMEM70	chr8	73971195	73987783
TMEM70_chr8_73971195_73987783	0/0	a0009	260	1	0	0	1	0	0	copy fasta	TMEM70	chr8	73971195	73987783