JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM71_chr8_132704941_132765582	1/1	a0001	295	371	73	70	178	10	38	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	a0002	295	2	2	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	a0003	295	2	0	2	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	a0004	295	1	1	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	a0005	295	1	1	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM71_chr8_132704941_132765582	0/0	a0006	295	1	1	0	0	0	0	copy fasta	TMEM71	chr8	132704941	132765582
TMEM72_chr10_44906337_44942010	1/1	a0001	275	389	77	66	182	18	44	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	a0002	275	11	9	2	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	a0003	275	2	2	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	a0004	275	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	a0005	275	1	0	0	1	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	a0006	275	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM72_chr10_44906337_44942010	0/0	a0007	275	1	1	0	0	0	0	copy fasta	TMEM72	chr10	44906337	44942010
TMEM74B_chr20_1175570_1189981	1/1	a0001	256	441	94	84	197	16	48	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	a0002	256	1	0	0	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	a0003	256	1	0	0	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74B_chr20_1175570_1189981	0/0	a0004	256	1	0	0	1	0	0	copy fasta	TMEM74B	chr20	1175570	1189981
TMEM74_chr8_108773974_108792594	1/1	a0001	305	409	92	74	189	10	42	copy fasta	TMEM74	chr8	108773974	108792594
TMEM74_chr8_108773974_108792594	0/0	a0002	305	1	0	0	1	0	0	copy fasta	TMEM74	chr8	108773974	108792594
TMEM79_chr1_156279325_156297443	1/1	a0001	394	280	72	46	124	10	26	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	a0002	394	88	6	22	39	6	15	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	a0003	394	4	0	0	4	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	a0004	394	2	2	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	a0005	394	1	1	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	a0006	394	1	0	0	1	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	a0007	394	1	1	0	0	0	0	copy fasta	TMEM79	chr1	156279325	156297443
TMEM79_chr1_156279325_156297443	0/0	a0008	394	1	0	0	0	0	1	copy fasta	TMEM79	chr1	156279325	156297443
TMEM80_chr11_690816_709129	1/1	a0001	143	400	94	75	169	18	42	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	a0002	143	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	a0003	108	1	0	0	1	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	a0004	143	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM80_chr11_690816_709129	0/0	a0005	143	1	0	1	0	0	0	copy fasta	TMEM80	chr11	690816	709129
TMEM81_chr1_205078129_205089460	0/1	a0001	255	285	18	59	165	13	29	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	1/0	a0002	255	68	46	6	8	1	6	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	a0003	255	43	27	2	3	4	7	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	a0004	255	4	0	0	4	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	a0005	255	4	3	1	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM81_chr1_205078129_205089460	0/0	a0006	255	2	2	0	0	0	0	copy fasta	TMEM81	chr1	205078129	205089460
TMEM82_chr1_15737499_15752982	1/0	a0001	343	311	61	70	121	12	46	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0002	343	25	0	0	24	1	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0003	343	21	14	4	0	2	1	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0004	343	7	4	3	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0005	343	3	3	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/1	a0006	344	3	0	1	0	1	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0007	343	2	0	0	2	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0008	343	2	2	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0009	343	2	1	1	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0010	343	2	0	0	0	1	1	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0011	343	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0012	343	1	0	1	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982