JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM82_chr1_15737499_15752982	0/0	a0013	343	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0014	343	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0015	343	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0016	343	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0017	343	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0018	343	1	0	0	0	1	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0019	343	1	1	0	0	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM82_chr1_15737499_15752982	0/0	a0020	343	1	0	0	1	0	0	copy fasta	TMEM82	chr1	15737499	15752982
TMEM86A_chr11_18693779_18709785	1/1	a0001	240	450	84	78	222	18	46	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	a0002	240	15	14	1	0	0	0	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86A_chr11_18693779_18709785	0/0	a0003	240	3	0	1	0	0	2	copy fasta	TMEM86A	chr11	18693779	18709785
TMEM86B_chr19_55221638_55233763	0/1	a0001	226	384	97	76	159	14	37	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	1/0	a0002	226	38	0	4	21	2	10	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	a0003	226	2	0	0	2	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	a0004	226	2	0	0	0	0	2	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	a0005	226	1	0	0	0	0	1	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	a0006	151	1	1	0	0	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	a0007	226	1	0	0	1	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM86B_chr19_55221638_55233763	0/0	a0008	226	1	0	0	1	0	0	copy fasta	TMEM86B	chr19	55221638	55233763
TMEM87A_chr15_42205447_42278433	1/1	a0001	555	328	90	54	134	12	36	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87A_chr15_42205447_42278433	0/0	a0002	555	2	2	0	0	0	0	copy fasta	TMEM87A	chr15	42205447	42278433
TMEM87B_chr2_112050269_112124314	1/1	a0001	555	233	59	51	86	7	28	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	a0002	554	77	23	17	22	7	8	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM87B_chr2_112050269_112124314	0/0	a0003	555	6	0	2	0	2	2	copy fasta	TMEM87B	chr2	112050269	112124314
TMEM88B_chr1_1420871_1435255	1/1	a0001	163	2	0	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88B_chr1_1420871_1435255	0/0	a0002	163	1	1	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88B_chr1_1420871_1435255	0/0	a0003	163	1	1	0	0	0	0	copy fasta	TMEM88B	chr1	1420871	1435255
TMEM88_chr17_7850066_7861099	1/1	a0001	159	386	89	76	156	16	47	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0002	159	37	0	1	35	0	1	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0003	159	3	3	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0004	159	1	0	0	1	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0005	159	1	0	1	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0006	159	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0007	159	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0008	159	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM88_chr17_7850066_7861099	0/0	a0009	159	1	1	0	0	0	0	copy fasta	TMEM88	chr17	7850066	7861099
TMEM89_chr3_48615759_48626769	1/1	a0001	159	264	61	35	111	15	40	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	a0002	159	36	20	8	7	1	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	a0003	159	5	5	0	0	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	a0004	159	4	4	0	0	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	a0005	159	2	0	0	2	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM89_chr3_48615759_48626769	0/0	a0006	159	1	0	1	0	0	0	copy fasta	TMEM89	chr3	48615759	48626769
TMEM8B_chr9_35824228_35870515	1/0	a0001	924	281	76	47	126	7	24	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/1	a0002	924	118	13	22	62	6	14	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0003	924	5	0	0	5	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0004	924	2	2	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0005	924	2	0	2	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0006	924	2	0	0	0	0	2	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0007	924	1	0	0	0	1	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0008	924	1	0	1	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515