JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM8B_chr9_35824228_35870515	0/0	a0009	924	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0010	924	1	1	0	0	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0011	924	1	0	0	1	0	0	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM8B_chr9_35824228_35870515	0/0	a0012	924	1	0	0	0	0	1	copy fasta	TMEM8B	chr9	35824228	35870515
TMEM91_chr19_41371533_41389083	0/0	a0000	0	1	0	0	0	0	1	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	1/1	a0001	172	380	86	70	161	14	47	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	a0002	172	9	8	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	a0003	172	2	0	2	0	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	a0004	172	1	0	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM91_chr19_41371533_41389083	0/0	a0005	172	1	0	0	1	0	0	copy fasta	TMEM91	chr19	41371533	41389083
TMEM92_chr17_50269466_50286485	0/1	a0001	159	280	42	48	155	5	29	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	1/0	a0002	159	123	21	36	43	10	12	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	a0003	159	58	15	1	34	1	7	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	a0004	159	20	19	1	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM92_chr17_50269466_50286485	0/0	a0005	159	1	1	0	0	0	0	copy fasta	TMEM92	chr17	50269466	50286485
TMEM94_chr17_75451635_75505452	1/1	a0001	1356	347	84	59	154	14	34	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	a0002	1356	3	3	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	a0003	1356	1	0	0	0	0	1	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	a0004	1356	1	1	0	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	a0005	1356	1	0	0	0	0	1	copy fasta	TMEM94	chr17	75451635	75505452
TMEM94_chr17_75451635_75505452	0/0	a0006	1356	1	0	1	0	0	0	copy fasta	TMEM94	chr17	75451635	75505452
TMEM95_chr17_7350156_7362219	1/1	a0001	176	422	100	85	171	18	46	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	a0002	176	8	0	0	8	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	a0003	176	1	0	0	1	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM95_chr17_7350156_7362219	0/0	a0004	176	1	0	1	0	0	0	copy fasta	TMEM95	chr17	7350156	7362219
TMEM97_chr17_28314200_28333685	1/1	a0001	176	371	88	72	155	10	44	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	a0002	149	2	0	0	2	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM97_chr17_28314200_28333685	0/0	a0003	46	1	0	0	1	0	0	copy fasta	TMEM97	chr17	28314200	28333685
TMEM98_chr17_32923153_32949315	1/1	a0001	226	398	91	78	169	18	40	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	a0002	226	3	1	2	0	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM98_chr17_32923153_32949315	0/0	a0003	226	1	0	0	1	0	0	copy fasta	TMEM98	chr17	32923153	32949315
TMEM9B_chr11_8942202_8969442	1/1	a0001	198	442	98	68	212	16	46	copy fasta	TMEM9B	chr11	8942202	8969442
TMEM9_chr1_201129772_201159474	1/1	a0001	183	430	92	80	194	16	46	copy fasta	TMEM9	chr1	201129772	201159474
TMF1_chr3_69014827_69057333	1/1	a0001	1093	371	77	60	179	16	37	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0002	1093	9	8	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0003	1093	8	0	6	0	1	1	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0004	1093	3	0	0	3	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0005	1093	2	0	0	2	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0006	1093	2	2	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0007	1093	1	0	0	0	1	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0008	475	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0009	1093	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0010	1093	1	0	1	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0011	1093	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0012	1093	1	0	0	1	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMF1_chr3_69014827_69057333	0/0	a0013	1093	1	1	0	0	0	0	copy fasta	TMF1	chr3	69014827	69057333
TMIE_chr3_46696392_46715886	0/1	a0001	155	296	83	54	118	10	30	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	1/0	a0002	156	132	10	25	76	8	12	copy fasta	TMIE	chr3	46696392	46715886
TMIE_chr3_46696392_46715886	0/0	a0003	157	4	3	1	0	0	0	copy fasta	TMIE	chr3	46696392	46715886
TMIGD1_chr17_30311333_30339057	1/1	a0001	262	341	95	74	119	12	39	copy fasta	TMIGD1	chr17	30311333	30339057