JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMIGD1_chr17_30311333_30339057	0/0	a0002	262	3	3	0	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	a0003	262	1	0	0	0	0	1	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	a0004	262	1	0	1	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	a0005	262	1	0	0	1	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD1_chr17_30311333_30339057	0/0	a0006	262	1	0	1	0	0	0	copy fasta	TMIGD1	chr17	30311333	30339057
TMIGD2_chr19_4287227_4307389	1/1	a0001	278	284	67	44	140	7	24	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0002	278	63	5	17	31	3	7	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0003	278	48	1	11	19	4	13	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0004	278	15	9	4	1	0	1	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0005	278	8	8	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0006	278	5	0	1	0	0	4	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0007	278	4	4	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0008	278	3	2	0	0	0	1	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0009	278	1	0	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0010	278	1	0	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0011	278	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0012	278	1	0	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0013	278	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	a0014	278	1	0	0	1	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD3_chr1_111478348_111508633	1/1	a0001	347	453	96	80	215	12	48	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0002	347	3	0	0	3	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0003	347	2	2	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0004	347	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0005	347	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0006	347	1	1	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0007	347	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0008	347	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	a0009	347	1	1	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMLHE_chrX_155484011_155617952	1/1	a0001	421	211	55	38	84	7	25	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	a0002	421	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	a0003	367	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	a0004	366	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	a0005	421	1	0	0	0	0	1	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	a0006	359	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMOD1_chr9_97496666_97606743	1/1	a0001	359	334	86	66	130	14	36	copy fasta	TMOD1	chr9	97496666	97606743
TMOD2_chr15_51746597_51821363	1/1	a0001	351	367	90	67	162	10	36	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	a0002	351	5	0	5	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	a0003	351	2	0	0	0	0	2	copy fasta	TMOD2	chr15	51746597	51821363
TMOD3_chr15_51824653_51920725	1/1	a0001	352	369	86	73	160	10	38	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	a0002	352	3	0	3	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD4_chr1_151164987_151180981	1/1	a0001	345	393	92	66	177	14	42	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	a0002	345	4	4	0	0	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	a0003	345	3	0	0	0	1	2	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	a0004	345	2	0	0	2	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	a0005	345	2	2	0	0	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	a0006	179	1	0	0	1	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	a0007	345	1	0	0	0	1	0	copy fasta	TMOD4	chr1	151164987	151180981
TMPO_chr12_98510590_98555351	1/1	a0001	454	370	93	68	148	17	42	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	a0002	454	4	1	2	0	1	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	a0003	454	1	0	0	1	0	0	copy fasta	TMPO	chr12	98510590	98555351