JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMPO_chr12_98510590_98555351	0/0	a0004	454	1	0	0	1	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPPE_chr3_33085422_33102146	1/1	a0001	453	449	89	74	222	18	44	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	a0002	453	10	0	10	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	a0003	452	5	5	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	a0004	453	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	a0005	453	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPRSS11A_chr4_67904395_67968493	0/0	a0001	418	264	69	35	128	6	26	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0002	417	63	7	10	32	3	11	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0003	417	29	8	6	13	1	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	1/1	a0004	418	22	6	3	5	4	2	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0005	417	7	0	5	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0006	418	4	4	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0007	418	2	0	0	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0008	418	1	0	0	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0009	418	1	0	0	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	a0010	417	1	0	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11B_chr4_68221653_68250694	0/1	a0001	416	287	37	48	159	12	30	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	a0002	416	86	54	25	0	4	3	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	1/0	a0003	416	4	3	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	a0004	416	1	0	0	0	0	1	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	a0005	416	1	0	1	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	a0006	416	1	0	0	1	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11D_chr4_67815876_67889002	1/1	a0001	418	340	100	54	138	4	42	copy fasta	TMPRSS11D	chr4	67815876	67889002
TMPRSS11E_chr4_68442463_68502604	0/1	a0001	423	220	61	41	78	13	26	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	a0002	423	56	16	12	17	3	8	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	a0003	423	26	12	7	0	2	5	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	a0004	423	13	0	0	12	0	1	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	a0005	423	2	2	0	0	0	0	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	a0006	423	1	0	0	1	0	0	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11E_chr4_68442463_68502604	0/0	a0007	423	1	1	0	0	0	0	copy fasta	TMPRSS11E	chr4	68442463	68502604
TMPRSS11F_chr4_68048198_68134869	1/1	a0001	438	208	50	42	84	10	20	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0002	438	120	30	15	59	2	14	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0003	438	12	12	0	0	0	0	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0004	438	2	0	0	0	2	0	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0005	433	2	2	0	0	0	0	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0006	438	1	0	1	0	0	0	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0007	438	1	1	0	0	0	0	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0008	438	1	1	0	0	0	0	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS11F_chr4_68048198_68134869	0/0	a0009	438	1	0	0	1	0	0	copy fasta	TMPRSS11F	chr4	68048198	68134869
TMPRSS12_chr12_50837926_50892884	0/1	a0001	348	212	42	29	114	6	20	copy fasta	TMPRSS12	chr12	50837926	50892884
TMPRSS12_chr12_50837926_50892884	0/0	a0002	348	130	28	24	64	1	13	copy fasta	TMPRSS12	chr12	50837926	50892884
TMPRSS12_chr12_50837926_50892884	0/0	a0003	348	35	8	11	4	5	7	copy fasta	TMPRSS12	chr12	50837926	50892884
TMPRSS12_chr12_50837926_50892884	1/0	a0004	348	7	6	0	0	0	0	copy fasta	TMPRSS12	chr12	50837926	50892884
TMPRSS12_chr12_50837926_50892884	0/0	a0005	348	4	4	0	0	0	0	copy fasta	TMPRSS12	chr12	50837926	50892884
TMPRSS12_chr12_50837926_50892884	0/0	a0006	348	1	1	0	0	0	0	copy fasta	TMPRSS12	chr12	50837926	50892884
TMPRSS12_chr12_50837926_50892884	0/0	a0007	348	1	1	0	0	0	0	copy fasta	TMPRSS12	chr12	50837926	50892884
TMPRSS13_chr11_117895641_117934402	0/1	a0001	562	320	83	67	127	9	33	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	1/0	a0002	567	120	3	18	79	6	13	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	a0003	562	3	3	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402
TMPRSS13_chr11_117895641_117934402	0/0	a0004	567	3	3	0	0	0	0	copy fasta	TMPRSS13	chr11	117895641	117934402