JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMPRSS15_chr21_18264116_18408785	0/0	a0035	1019	1	0	0	1	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	a0036	1019	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	a0037	1019	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	a0038	1019	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	a0039	1019	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	a0040	1019	1	0	0	0	0	1	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	a0041	1019	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS2_chr21_41459305_41513158	1/1	a0001	492	268	78	62	83	7	36	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0002	492	104	18	9	64	5	8	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0003	492	2	0	1	0	0	1	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0004	492	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0005	492	1	0	0	0	0	1	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0006	497	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0007	492	1	0	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0008	492	1	0	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0009	492	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0010	492	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	a0011	492	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS3_chr21_42366890_42401052	0/0	a0000	0	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	1/0	a0001	453	278	64	62	98	15	38	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/1	a0002	453	87	18	8	50	0	10	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0003	453	51	1	4	45	1	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0004	453	25	3	1	21	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0005	453	14	7	6	0	1	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0006	453	8	5	3	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0007	453	3	0	0	3	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0008	453	2	0	1	0	1	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0009	453	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0010	453	1	0	1	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	a0011	453	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS4_chr11_118072078_118126890	0/1	a0001	437	324	73	67	133	13	37	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0002	437	26	0	0	22	0	4	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0003	437	20	6	0	13	1	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0004	437	12	12	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0005	437	9	0	6	1	1	1	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	1/0	a0006	437	7	0	3	0	0	3	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0007	437	3	3	0	0	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0008	437	3	0	2	0	0	1	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0009	437	1	0	0	0	1	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS4_chr11_118072078_118126890	0/0	a0010	437	1	0	0	1	0	0	copy fasta	TMPRSS4	chr11	118072078	118126890
TMPRSS5_chr11_113682550_113711308	0/1	a0001	457	334	85	57	160	5	26	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	1/0	a0002	457	69	4	15	31	4	14	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0003	217	7	0	0	7	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0004	457	5	0	4	0	1	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0005	457	3	3	0	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0006	457	2	0	2	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0007	457	2	2	0	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0008	457	1	1	0	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0009	457	1	0	0	1	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS5_chr11_113682550_113711308	0/0	a0010	457	1	0	0	1	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308