JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BLTP3A_chr6_34787083_34882514	1/0	a0001	1440	134	21	24	65	7	16	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0002	1440	51	3	4	42	0	2	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0003	1440	45	13	10	18	1	3	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/1	a0004	1440	37	21	5	1	2	7	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0005	1440	9	0	5	1	0	3	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0006	1440	5	0	0	5	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0007	1440	5	5	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0008	1440	4	4	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0009	1440	3	3	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0010	1440	3	1	2	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0011	1440	2	0	0	2	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0012	1440	2	2	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0013	1440	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0014	1440	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0015	1440	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0016	1440	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0017	1440	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0018	1440	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0019	1440	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0020	1440	1	0	0	0	0	1	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0021	1440	1	0	0	1	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0022	1440	1	0	1	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0023	1440	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3A_chr6_34787083_34882514	0/0	a0024	1440	1	1	0	0	0	0	copy fasta	BLTP3A	chr6	34787083	34882514
BLTP3B_chr12_100032072_100147874	1/1	a0001	1464	112	32	32	29	3	14	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0002	1464	19	19	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0003	1464	18	5	4	3	2	4	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0004	1464	6	0	3	1	0	2	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0005	1464	5	3	1	0	1	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0006	1464	5	0	5	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0007	1464	4	3	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0008	1464	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0009	1464	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0010	1464	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0011	1464	2	2	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0012	1464	1	0	0	1	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0013	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0014	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0015	1464	1	0	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0016	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0017	1464	1	0	1	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0018	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0019	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0020	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0021	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLTP3B_chr12_100032072_100147874	0/0	a0022	1464	1	1	0	0	0	0	copy fasta	BLTP3B	chr12	100032072	100147874
BLVRA_chr7_43753680_43812342	0/1	a0001	296	321	85	69	134	10	22	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	1/0	a0002	296	85	5	12	52	5	10	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	a0003	296	2	0	0	0	0	2	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	a0004	296	2	0	0	0	0	2	copy fasta	BLVRA	chr7	43753680	43812342