JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMPRSS5_chr11_113682550_113711308	0/0	a0011	457	1	1	0	0	0	0	copy fasta	TMPRSS5	chr11	113682550	113711308
TMPRSS6_chr22_37060436_37114713	0/0	a0001	802	106	45	27	25	4	5	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0002	802	87	25	15	33	6	8	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	1/0	a0003	802	78	3	16	40	5	13	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/1	a0004	802	48	4	14	21	1	7	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0005	802	6	6	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0006	802	3	0	0	3	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0007	802	2	2	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0008	802	2	2	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0009	802	2	0	0	0	0	2	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0010	802	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0011	802	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0012	802	1	0	1	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0013	802	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0014	802	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0015	802	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0016	802	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0017	802	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0018	802	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0019	802	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0020	802	1	0	0	0	0	1	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0021	802	1	0	1	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0022	802	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	a0023	802	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS7_chr3_112029736_112086269	0/1	a0001	843	303	41	70	153	9	29	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0002	843	36	8	1	16	0	11	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	1/0	a0003	843	15	12	1	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0004	843	13	4	0	3	0	6	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0005	843	11	5	1	3	2	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0006	843	6	2	2	2	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0007	843	5	0	3	0	2	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0008	449	4	4	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0009	843	4	4	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0010	843	4	4	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0011	843	3	3	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0012	843	3	3	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0013	850	1	0	0	0	0	1	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0014	843	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0015	843	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0016	843	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0017	843	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0018	843	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0019	843	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0020	843	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0021	817	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0022	843	1	0	0	0	1	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0023	843	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0024	843	1	0	0	0	0	1	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	a0025	843	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS9_chr19_2355265_2431261	0/0	a0001	1093	36	4	11	9	4	8	copy fasta	TMPRSS9	chr19	2355265	2431261