JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMPRSS9_chr19_2355265_2431261	0/0	a0002	1093	34	7	7	8	3	9	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0003	1093	9	0	2	6	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	1/1	a0004	1093	8	0	3	1	1	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0005	1093	4	0	0	4	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0006	1093	3	0	0	2	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0007	1093	3	0	1	1	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0008	1093	3	1	2	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0009	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0010	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0011	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0012	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0013	1093	1	0	0	0	1	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0014	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0015	1093	1	0	0	0	1	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0016	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0017	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0018	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0019	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0020	1093	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0021	1093	1	0	0	0	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	a0022	1093	1	0	0	1	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMSB10_chr2_84900656_84911671	1/1	a0001	44	356	88	74	132	18	42	copy fasta	TMSB10	chr2	84900656	84911671
TMSB15A_chrX_102508682_102521739	1/1	a0001	45	291	78	47	121	13	30	copy fasta	TMSB15A	chrX	102508682	102521739
TMSB15B_chrX_103957627_103970976	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15B_chrX_103957627_103970976	0/1	a0001	45	267	69	48	115	11	23	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15C_chrX_104067887_104081236	0/0	a0001	45	94	19	16	45	4	10	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB4X_chrX_12970110_12982223	1/1	a0001	44	306	72	56	131	13	32	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4Y_chrY_13698899_13711024	1/1	a0001	44	132	18	20	71	5	16	copy fasta	TMSB4Y	chrY	13698899	13711024
TMT1A_chr12_50920015_50937508	1/1	a0001	244	403	85	73	187	16	40	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	a0002	244	42	7	0	29	0	6	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	a0003	244	1	0	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1B_chr12_55676736_55689611	1/1	a0001	244	428	84	77	204	18	43	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	a0002	223	8	6	2	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	a0003	244	7	6	1	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	a0004	244	2	2	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	a0005	244	2	1	1	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	a0006	244	1	0	0	0	0	1	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	a0007	223	1	0	1	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	a0008	244	1	1	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMTC1_chr12_29495840_29788942	1/0	a0001	882	210	60	28	85	11	25	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/1	a0002	882	61	13	15	25	3	4	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	a0003	882	2	0	1	0	0	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	a0004	882	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	a0005	305	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC2_chr12_82681906_83139866	1/1	a0001	836	84	42	22	4	4	10	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	a0002	836	10	8	2	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	a0003	836	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	a0004	836	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC3_chr12_88137307_88204887	1/1	a0001	914	217	75	38	72	8	22	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	a0002	914	17	8	0	9	0	0	copy fasta	TMTC3	chr12	88137307	88204887