JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMTC3_chr12_88137307_88204887	0/0	a0003	914	2	2	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	a0004	914	2	2	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	a0005	914	2	0	0	2	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	a0006	914	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	a0007	914	1	0	0	1	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC4_chr13_100598625_100679795	1/0	a0001	760	203	57	52	55	13	25	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/1	a0002	760	123	32	11	63	3	13	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0003	760	10	0	0	8	0	2	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0004	760	3	3	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0005	760	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0006	760	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0007	760	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0008	760	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0009	760	1	0	1	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0010	760	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	a0011	760	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMUB1_chr7_151076085_151088493	1/1	a0001	246	402	93	66	183	18	40	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	a0002	246	1	1	0	0	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	a0003	246	1	0	0	1	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB2_chr17_44181972_44196929	1/1	a0001	321	337	78	65	140	14	38	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	a0002	321	19	13	1	5	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	a0003	321	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	a0004	207	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	a0005	321	1	1	0	0	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	a0006	321	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMX1_chr14_51235247_51262655	1/1	a0001	280	424	98	76	190	16	42	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	a0002	280	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	a0003	280	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX2_chr11_57707593_57745973	0/0	a0001	296	343	86	66	137	14	40	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	a0002	296	1	0	0	1	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX3_chr18_68668688_68720108	1/1	a0001	454	303	84	52	125	11	29	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0002	454	7	0	0	7	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0003	454	2	1	1	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0004	454	1	1	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0005	454	1	0	0	0	0	1	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0006	454	1	0	0	0	1	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0007	454	1	0	1	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0008	445	1	0	0	1	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	a0009	454	1	0	0	1	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX4_chr20_7972346_8024761	1/1	a0001	349	189	32	46	71	6	32	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	a0002	349	154	56	16	76	0	6	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	a0003	349	2	0	0	2	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	a0004	349	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TNC_chr9_115014575_115123157	0/0	a0001	2201	50	7	10	21	4	8	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0002	2201	47	2	10	26	1	8	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0003	2201	39	9	4	23	1	2	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0004	2201	31	6	6	12	0	7	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0005	2201	24	5	10	2	2	5	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0006	2201	18	3	8	7	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0007	2201	17	0	0	15	0	2	copy fasta	TNC	chr9	115014575	115123157