JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNC_chr9_115014575_115123157	0/0	a0008	2201	15	0	5	1	5	4	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0009	2201	15	2	5	5	0	3	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0010	2201	12	0	0	11	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0011	2201	11	6	0	4	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0012	2201	7	7	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0013	2201	5	4	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0014	2201	5	2	3	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0015	2201	5	0	0	5	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0016	2201	4	1	0	3	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0017	2201	4	4	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0018	2201	3	2	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/1	a0019	2201	3	0	2	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0020	2201	3	0	0	3	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0021	2201	3	2	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0022	2201	3	2	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0023	2201	3	3	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0024	2201	2	1	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0025	2201	2	0	0	2	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0026	2201	2	2	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0027	2201	2	2	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0028	2201	2	2	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0029	2201	2	2	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0030	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0031	2201	1	0	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	1/0	a0032	2201	1	0	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0033	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0034	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0035	2201	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0036	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0037	2201	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0038	2201	1	0	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0039	2201	1	0	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0040	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0041	2201	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0042	2201	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0043	2201	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0044	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0045	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0046	2201	1	0	0	0	1	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0047	2201	1	0	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0048	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0049	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0050	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0051	2201	1	0	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0052	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0053	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0054	2201	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0055	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	a0056	2201	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNFAIP1_chr17_28330761_28352009	1/1	a0001	316	339	90	66	123	12	46	copy fasta	TNFAIP1	chr17	28330761	28352009