JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNFRSF10A_chr8_23185452_23230102	0/0	a0010	468	3	3	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0011	468	3	3	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0012	468	2	0	1	0	0	1	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0013	468	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0014	468	1	0	1	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0015	468	1	0	0	0	0	1	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0016	468	1	0	1	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0017	468	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0018	468	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0019	468	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	a0020	468	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10B_chr8_23015133_23074031	0/1	a0001	440	213	39	28	111	6	28	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0002	440	56	16	16	13	7	4	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0003	440	50	0	3	40	0	7	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0004	440	36	20	9	4	1	2	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	1/0	a0005	440	7	5	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0006	440	6	5	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0007	440	3	3	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0008	440	3	0	1	2	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0009	440	2	0	2	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0010	440	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0011	440	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0012	440	1	0	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0013	440	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0014	440	1	0	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0015	440	1	0	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0016	440	1	0	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	a0017	440	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10C_chr8_23097921_23122445	0/1	a0001	259	296	32	59	157	14	33	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	1/0	a0002	259	93	24	11	49	1	7	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0003	274	49	31	1	11	1	5	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0004	274	5	5	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0005	259	4	4	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0006	259	3	2	1	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0007	259	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0008	259	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0009	274	1	0	0	0	0	1	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	a0010	259	1	0	0	1	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10D_chr8_23130588_23169027	0/1	a0001	386	192	27	37	84	10	33	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0002	386	129	3	23	99	1	3	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	1/0	a0003	386	62	35	15	2	4	5	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0004	386	30	18	4	7	0	1	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0005	386	6	0	3	0	1	2	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0006	386	4	4	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0007	320	4	4	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0008	386	2	0	0	2	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0009	386	2	1	1	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0010	386	2	1	1	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0011	386	2	2	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	a0012	348	2	1	0	0	0	1	copy fasta	TNFRSF10D	chr8	23130588	23169027