JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNFRSF17_chr16_11960210_11973068	1/0	a0002	184	18	11	1	0	0	5	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	a0003	184	2	2	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	a0004	184	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	a0005	184	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	a0006	184	1	0	1	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	a0007	184	1	0	0	1	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	a0008	184	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	a0009	184	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF18_chr1_1198508_1211592	1/1	a0001	241	348	65	63	157	18	43	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0002	241	23	22	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0003	241	6	5	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0004	241	3	3	0	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0005	241	2	2	0	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0006	241	1	0	0	0	0	1	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0007	241	1	1	0	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0008	241	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	a0009	241	1	0	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF19_chr13_23565412_23681093	1/0	a0001	417	204	41	31	104	7	20	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0002	417	96	27	18	42	3	6	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0003	417	48	7	13	25	0	3	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0004	417	25	12	1	11	0	1	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0005	417	5	4	1	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0006	417	3	1	1	0	1	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0007	417	2	0	1	0	1	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0008	417	2	0	0	2	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/1	a0009	417	1	0	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0010	417	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	a0011	417	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF1A_chr12_6323771_6347076	1/1	a0001	455	426	93	76	195	18	42	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	a0002	455	4	3	1	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	a0003	455	3	0	3	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	a0004	455	1	0	0	1	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1B_chr1_12161991_12214220	1/0	a0001	461	292	73	58	117	10	33	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0002	461	56	16	11	18	4	7	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0003	461	5	0	0	5	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0004	461	2	2	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/1	a0005	461	2	0	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0006	461	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0007	461	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0008	461	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0009	461	1	0	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	a0010	461	1	0	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF21_chr6_47226532_47314905	1/1	a0001	655	335	83	61	138	14	37	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	a0002	655	11	11	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	a0003	655	1	0	0	0	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	a0004	655	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF25_chr1_6455786_6471173	1/1	a0001	417	281	69	67	92	14	37	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	a0002	417	19	7	7	4	0	1	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	a0003	417	16	16	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	a0004	417	4	4	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173