JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNFSF18_chr1_173034202_173055941	0/0	a0002	177	1	0	0	0	1	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	a0003	177	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF4_chr1_173178731_173212331	1/1	a0001	183	288	86	64	94	16	26	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF8_chr9_114896145_114935591	1/1	a0001	234	403	92	80	173	12	44	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	a0002	234	1	0	0	1	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF9_chr19_6526026_6540924	1/1	a0001	254	376	86	82	141	15	50	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	a0002	254	3	3	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	a0003	254	2	1	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	a0004	254	1	0	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	a0005	254	1	0	0	0	1	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	a0006	254	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	a0007	254	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	a0008	254	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNF_chr6_31570565_31583336	0/1	a0001	233	401	80	70	190	18	42	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	a0002	233	1	0	1	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	a0003	233	1	0	1	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNIK_chr3_171053414_171465405	1/1	a0001	1360	99	58	17	10	2	10	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	a0002	1360	4	1	3	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	a0003	1360	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIP1_chr5_151024945_151086034	1/1	a0001	636	320	62	54	165	8	29	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0002	636	27	16	5	0	3	3	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0003	630	20	2	4	9	0	5	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0004	636	6	6	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0005	636	5	0	0	5	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0006	636	3	3	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0007	636	3	0	2	0	0	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0008	636	3	0	1	0	1	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0009	636	3	0	0	3	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0010	630	2	1	1	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0011	636	2	0	2	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0012	636	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0013	630	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0014	636	1	0	1	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0015	636	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0016	636	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0017	630	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0018	630	1	0	0	0	0	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	a0019	636	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP2_chr4_2736648_2761336	1/1	a0001	429	246	78	31	103	10	22	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0002	429	144	6	41	72	6	19	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0003	429	13	2	3	8	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0004	429	11	8	0	2	0	1	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0005	429	4	0	1	1	0	2	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0006	429	2	2	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0007	429	2	2	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0008	429	1	0	0	1	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	a0009	429	1	0	0	1	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP3_chr4_121126408_121169321	1/1	a0001	325	269	75	59	78	14	41	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	a0002	319	13	13	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	a0003	319	7	0	3	2	2	0	copy fasta	TNIP3	chr4	121126408	121169321