JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BLVRA_chr7_43753680_43812342	0/0	a0005	296	1	0	0	1	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	a0006	296	1	0	0	0	1	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	a0007	296	1	0	1	0	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRA_chr7_43753680_43812342	0/0	a0008	296	1	0	0	1	0	0	copy fasta	BLVRA	chr7	43753680	43812342
BLVRB_chr19_40442768_40470745	1/1	a0001	206	360	96	72	124	18	48	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	a0002	206	1	0	0	1	0	0	copy fasta	BLVRB	chr19	40442768	40470745
BLVRB_chr19_40442768_40470745	0/0	a0003	206	1	0	0	1	0	0	copy fasta	BLVRB	chr19	40442768	40470745
BLZF1_chr1_169363195_169393305	1/1	a0001	400	255	71	62	75	16	29	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	a0002	400	99	12	8	67	0	12	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	a0003	400	8	6	2	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	a0004	400	2	2	0	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	a0005	400	1	1	0	0	0	0	copy fasta	BLZF1	chr1	169363195	169393305
BLZF1_chr1_169363195_169393305	0/0	a0006	400	1	0	0	0	0	1	copy fasta	BLZF1	chr1	169363195	169393305
BMAL1_chr11_13272790_13392266	1/1	a0001	626	313	81	52	136	12	30	copy fasta	BMAL1	chr11	13272790	13392266
BMAL1_chr11_13272790_13392266	0/0	a0002	626	1	1	0	0	0	0	copy fasta	BMAL1	chr11	13272790	13392266
BMAL2_chr12_27327836_27430286	1/1	a0001	636	298	69	50	135	10	32	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	a0002	636	6	3	0	0	0	3	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	a0003	636	3	0	0	1	0	2	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	a0004	636	2	2	0	0	0	0	copy fasta	BMAL2	chr12	27327836	27430286
BMAL2_chr12_27327836_27430286	0/0	a0005	636	1	0	0	0	0	1	copy fasta	BMAL2	chr12	27327836	27430286
BMERB1_chr16_15429588_15593259	0/1	a0001	204	287	82	62	98	14	30	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	a0002	204	3	0	0	3	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	a0003	204	1	0	0	1	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMF_chr15_40082890_40113879	1/1	a0001	184	413	89	70	192	18	42	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	a0002	184	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMI1_chr10_22316099_22336484	1/1	a0001	326	246	90	58	64	6	26	copy fasta	BMI1	chr10	22316099	22336484
BMP10_chr2_68855909_68876397	1/0	a0001	424	405	92	69	183	16	44	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	a0002	424	7	3	4	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	a0003	424	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/1	a0004	424	1	0	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	a0005	424	1	0	0	1	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	a0006	424	1	0	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP15_chrX_50905735_50921641	1/1	a0001	392	219	31	49	101	13	23	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0002	393	49	32	6	8	0	3	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0003	393	8	8	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0004	392	5	0	2	0	0	3	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0005	392	4	4	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0006	393	3	3	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0007	392	1	0	0	0	0	1	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0008	392	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0009	368	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0010	368	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0011	392	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	a0012	392	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP1_chr8_22160372_22206482	1/1	a0001	730	407	93	66	188	16	42	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0002	730	2	0	0	0	0	2	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0003	730	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0004	730	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0005	730	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0006	730	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482