JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNIP3_chr4_121126408_121169321	0/0	a0004	325	2	2	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	a0005	325	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	a0006	325	1	0	0	0	0	1	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	a0007	325	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNK1_chr17_7376089_7394742	0/1	a0001	661	282	48	65	120	16	32	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	1/0	a0002	661	134	42	19	61	0	11	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0003	661	8	0	0	8	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0004	661	4	0	0	4	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0005	661	3	0	0	3	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0006	661	3	3	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0007	661	2	0	2	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0008	661	2	0	0	2	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0009	661	2	0	0	2	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0010	661	2	2	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0011	661	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0012	661	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0013	661	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0014	661	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0015	661	1	0	0	0	0	1	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0016	661	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0017	661	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0018	661	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0019	661	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	a0020	661	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK2_chr3_195858364_195913551	1/1	a0001	1055	254	76	35	108	11	22	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0002	650	48	10	16	14	0	8	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0003	1055	22	0	13	2	3	4	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0004	1055	12	0	0	12	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0005	1055	6	0	0	6	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0006	892	3	1	1	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0007	1055	3	1	2	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0008	1055	3	3	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0009	1055	2	0	0	0	0	2	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0010	1055	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0011	1055	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0012	1055	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0013	650	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0014	892	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0015	1055	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0016	650	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0017	650	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0018	1055	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0019	892	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0020	1055	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0021	1055	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0022	1055	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0023	1055	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0024	1055	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0025	1055	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0026	650	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551