JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNK2_chr3_195858364_195913551	0/0	a0027	1055	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	a0028	650	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNKS1BP1_chr11_57294642_57329952	0/0	a0001	1729	134	8	28	68	5	25	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	1/0	a0002	1729	123	61	13	36	4	8	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0003	1729	11	0	11	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0004	1729	11	0	5	1	3	2	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0005	1729	11	1	3	0	2	5	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/1	a0006	1729	10	0	7	0	1	1	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0007	1729	5	5	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0008	1729	5	5	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0009	1729	4	2	0	0	2	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0010	1729	3	0	3	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0011	1729	3	0	0	3	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0012	1729	2	0	2	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0013	1729	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0014	1729	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0015	1729	2	1	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0016	1729	2	1	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0017	1729	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0018	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0019	1729	1	0	0	0	0	1	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0020	1729	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0021	1729	1	0	0	0	1	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0022	1729	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0023	1729	1	0	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0024	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0025	1729	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0026	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0027	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0028	1729	1	0	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0029	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0030	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0031	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	a0032	1729	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS2_chr10_91793426_91870475	1/1	a0001	1166	340	84	60	140	14	40	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	a0002	1166	6	6	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS_chr8_9550912_9787346	1/1	a0001	1327	268	79	54	90	6	37	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	a0002	1327	2	0	0	2	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	a0003	1327	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	a0004	1327	1	0	0	0	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNMD_chrX_100579936_100604885	1/1	a0001	317	320	80	58	135	13	32	copy fasta	TNMD	chrX	100579936	100604885
TNMD_chrX_100579936_100604885	0/0	a0002	317	8	0	0	8	0	0	copy fasta	TNMD	chrX	100579936	100604885
TNNC1_chr3_52446100_52459041	1/1	a0001	161	362	90	80	138	16	36	copy fasta	TNNC1	chr3	52446100	52459041
TNNC2_chr20_45818214_45832312	1/1	a0001	160	412	94	68	188	16	44	copy fasta	TNNC2	chr20	45818214	45832312
TNNI1_chr1_201398784_201426730	1/1	a0001	187	458	94	83	217	16	46	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	a0002	187	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	a0003	187	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	a0004	187	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	a0005	187	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI2_chr11_1833981_1846678	1/1	a0001	182	467	99	86	218	16	46	copy fasta	TNNI2	chr11	1833981	1846678