JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNNI2_chr11_1833981_1846678	0/0	a0002	182	1	1	0	0	0	0	copy fasta	TNNI2	chr11	1833981	1846678
TNNI3K_chr1_74230387_74549428	1/1	a0001	835	176	84	36	38	4	12	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0002	835	7	0	0	7	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0003	835	2	0	0	2	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0004	835	2	0	0	2	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0005	835	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0006	835	1	0	0	1	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0007	835	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0008	835	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0009	835	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0010	835	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	a0011	835	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3_chr19_55146767_55162732	1/1	a0001	210	385	87	76	156	16	48	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	a0002	210	1	0	0	1	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	a0003	210	1	0	0	1	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	a0004	210	1	1	0	0	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNT1_chr19_55127698_55154206	1/1	a0001	278	306	86	59	112	11	36	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	a0002	278	10	2	5	0	1	2	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	a0003	278	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	a0004	278	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	a0005	278	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	a0006	278	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT2_chr1_201354014_201382680	1/1	a0001	298	409	84	76	195	13	39	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	a0002	298	33	12	0	13	3	5	copy fasta	TNNT2	chr1	201354014	201382680
TNNT3_chr11_1914703_1943702	1/0	a0001	258	120	36	24	32	8	19	copy fasta	TNNT3	chr11	1914703	1943702
TNNT3_chr11_1914703_1943702	0/0	a0002	257	5	2	0	0	0	3	copy fasta	TNNT3	chr11	1914703	1943702
TNN_chr1_175062833_175153075	0/0	a0001	1299	52	25	11	5	4	7	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0002	1299	41	24	6	4	4	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0003	1299	34	1	0	26	2	5	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	1/1	a0004	1299	24	1	4	15	0	2	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0005	1299	24	0	7	17	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0006	1299	21	0	8	10	0	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0007	1299	20	10	1	3	1	5	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0008	1299	18	0	0	16	1	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0009	1299	14	0	3	5	2	4	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0010	1299	13	1	4	8	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0011	1299	11	0	5	5	1	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0012	1299	9	0	1	8	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0013	1299	8	6	1	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0014	1299	7	3	0	3	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0015	1299	7	1	2	1	0	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0016	1299	5	0	0	5	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0017	1299	5	0	2	3	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0018	1299	5	0	0	4	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0019	1299	4	4	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0020	1299	4	0	0	3	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0021	1299	3	0	0	0	0	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0022	1299	3	2	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0023	1299	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0024	1299	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075