JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNN_chr1_175062833_175153075	0/0	a0025	1299	2	0	0	2	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0026	1299	2	0	2	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0027	1299	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0028	1299	2	0	0	2	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0029	1294	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0030	1294	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0031	1299	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0032	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0033	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0034	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0035	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0036	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0037	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0038	1299	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0039	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0040	1299	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0041	1299	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0042	1299	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0043	1299	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0044	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0045	1299	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0046	1299	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0047	1299	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0048	1299	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0049	1299	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0050	1299	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0051	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0052	1299	1	0	0	0	1	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0053	1299	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0054	1211	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0055	1299	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0056	1299	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0057	1299	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	a0058	1299	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNP1_chr2_216854458_216865064	1/1	a0001	55	397	92	64	180	18	41	copy fasta	TNP1	chr2	216854458	216865064
TNP1_chr2_216854458_216865064	0/0	a0002	55	1	0	0	0	0	1	copy fasta	TNP1	chr2	216854458	216865064
TNP2_chr16_11262857_11274325	1/0	a0001	138	290	69	43	149	2	26	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/1	a0002	138	119	19	28	41	14	16	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	a0003	138	8	3	5	0	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	a0004	138	3	1	2	0	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	a0005	138	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	a0006	138	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	a0007	138	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	a0008	138	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNPO1_chr5_72811661_72919388	1/1	a0001	898	321	94	50	133	6	36	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	a0002	898	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO2_chr19_12694201_12728932	1/1	a0001	897	316	84	60	120	14	36	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	a0002	897	4	4	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO3_chr7_128949185_129060111	1/1	a0001	923	336	88	57	148	8	33	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	a0002	923	1	0	0	0	0	1	copy fasta	TNPO3	chr7	128949185	129060111