JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNRC18_chr7_5301811_5428834	0/0	a0050	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0051	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0052	2969	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0053	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0054	2969	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0055	2959	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0056	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0057	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0058	2968	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0059	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0060	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0061	2970	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0062	2966	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0063	2974	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0064	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0065	2966	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0066	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0067	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0068	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0069	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0070	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0071	2969	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0072	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0073	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0074	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0075	2968	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0076	2970	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0077	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0078	2972	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0079	2967	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0080	2970	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0081	2970	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0082	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0083	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0084	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0085	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0086	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0087	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0088	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0089	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0090	2968	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	1/0	a0091	2968	1	0	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0092	2968	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0093	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0094	365	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/1	a0095	2968	1	0	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0096	2968	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0097	1551	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0098	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	a0099	2968	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834