JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNRC6C_chr17_77953703_78113822	0/0	a0011	1936	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0012	1936	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0013	1455	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0014	1936	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0015	1936	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0016	1936	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0017	1455	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	a0018	1936	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNR_chr1_175310194_175748595	0/0	a0001	1358	57	33	6	11	3	4	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	1/0	a0002	1358	28	13	5	4	1	4	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/1	a0003	1358	24	4	6	7	1	5	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0004	1358	6	3	2	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0005	1358	4	1	2	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0006	1358	2	0	2	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0007	1358	2	2	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0008	1358	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0009	1358	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0010	1358	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0011	1358	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0012	1358	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0013	1358	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0014	1358	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0015	1358	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	a0016	1358	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNS1_chr2_217794791_218007995	0/0	a0001	1839	59	9	14	26	4	6	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0002	1839	35	5	11	12	1	6	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0003	1839	32	20	3	6	0	3	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	1/1	a0004	1839	22	5	4	7	2	2	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0005	1839	15	0	0	12	0	3	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0006	1839	6	4	0	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0007	1839	5	5	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0008	1839	4	0	2	0	1	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0009	1841	4	3	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0010	1841	4	4	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0011	1839	3	3	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0012	1839	3	3	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0013	1841	3	3	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0014	1839	2	2	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0015	1839	2	2	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0016	1838	2	1	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0017	1838	2	2	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0018	1839	2	0	0	0	0	2	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0019	1839	2	0	0	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0020	1839	2	0	0	0	0	2	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0021	1839	2	1	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0022	1839	2	0	2	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0023	1839	2	0	0	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0024	1839	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0025	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0026	1840	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995