JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNS1_chr2_217794791_218007995	0/0	a0027	1839	1	0	0	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0028	1839	1	0	0	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0029	1839	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0030	1839	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0031	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0032	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0033	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0034	1835	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0035	1839	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0036	1839	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0037	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0038	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0039	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0040	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0041	1839	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0042	1841	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0043	1839	1	0	0	1	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0044	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0045	1839	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0046	1839	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0047	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0048	1839	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0049	1839	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0050	1839	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0051	1839	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	a0052	1839	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS2_chr12_53045065_53069379	1/1	a0001	1409	342	81	70	140	10	39	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0002	1409	31	1	0	30	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0003	1409	7	5	0	0	0	2	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0004	1409	2	0	0	0	0	2	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0005	1409	2	2	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0006	1409	2	0	2	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0007	1409	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0008	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0009	1409	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0010	1409	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0011	1409	1	0	0	0	0	1	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0012	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0013	1409	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0014	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0015	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0016	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0017	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0018	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0019	1409	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0020	1409	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0021	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0022	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0023	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0024	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379