JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNS2_chr12_53045065_53069379	0/0	a0025	1409	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	a0026	1409	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS3_chr7_47270154_47587111	1/1	a0001	1445	159	55	39	30	11	22	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0002	1445	6	6	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0003	1445	5	5	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0004	1445	5	0	1	4	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0005	1445	3	0	1	0	0	2	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0006	1445	3	3	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0007	1445	2	1	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0008	1445	2	0	2	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0009	1445	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0010	1445	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0011	1445	1	0	0	0	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0012	1445	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0013	1445	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0014	1445	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0015	1445	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0016	1445	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0017	1445	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0018	1445	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	a0019	1445	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS4_chr17_40470834_40506623	1/0	a0001	715	232	54	45	90	14	28	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/1	a0002	715	110	11	23	55	2	18	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0003	715	28	25	2	0	1	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0004	715	6	0	0	6	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0005	715	5	5	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0006	715	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0007	715	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0008	715	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0009	715	1	0	0	0	1	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0010	715	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0011	715	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0012	715	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0013	715	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	a0014	715	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNXB_chr6_32036153_32114338	0/1	a0001	4244	63	1	18	36	3	4	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0002	4244	45	3	10	29	0	3	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0003	4244	22	0	0	22	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0004	4244	20	11	4	4	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0005	4244	17	0	1	16	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0006	4244	14	8	6	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0007	4244	14	1	0	13	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0008	4244	14	6	0	2	2	4	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0009	4244	11	6	0	5	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0010	4244	11	5	4	0	2	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0011	4244	10	2	4	1	1	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0012	4244	7	4	0	2	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0013	4244	6	0	1	5	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0014	4244	6	0	3	2	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0015	4244	6	0	0	6	0	0	copy fasta	TNXB	chr6	32036153	32114338