Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACAD9_chr3_128874620_128918114	0/0	a0003	621	2	0	1	0	0	1	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	a0004	621	1	1	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	a0005	621	1	0	0	1	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/1	a0006	621	1	0	0	0	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	a0007	621	1	0	0	1	0	0	copy fasta	ACAD9	chr3	128874620	128918114
ACAD9_chr3_128874620_128918114	0/0	a0008	621	1	0	0	0	0	1	copy fasta	ACAD9	chr3	128874620	128918114
ACADL_chr2_210182923_210230447	1/0	a0001	430	211	77	31	74	8	20	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	a0002	430	58	7	12	24	5	10	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/0	a0003	430	4	0	3	0	1	0	copy fasta	ACADL	chr2	210182923	210230447
ACADL_chr2_210182923_210230447	0/1	a0004	430	1	0	0	0	0	0	copy fasta	ACADL	chr2	210182923	210230447
ACADM_chr1_75719709_75768679	1/1	a0001	421	359	95	72	136	14	40	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	a0002	421	1	0	1	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	a0003	421	1	0	1	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	a0004	421	1	0	0	1	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	a0005	421	1	0	0	1	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADM_chr1_75719709_75768679	0/0	a0006	421	1	1	0	0	0	0	copy fasta	ACADM	chr1	75719709	75768679
ACADSB_chr10_123004006_123063290	1/0	a0001	432	281	77	39	129	5	30	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	a0002	432	66	10	16	28	2	10	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	a0003	432	13	2	7	0	3	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/1	a0004	432	5	3	0	0	0	1	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	a0005	432	5	0	2	3	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	a0006	432	2	0	2	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	a0007	432	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	a0008	432	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADS_chr12_120720826_120745008	1/0	a0001	412	357	87	50	172	14	33	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/1	a0002	412	57	3	23	17	3	10	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0003	412	3	0	2	0	1	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0004	412	2	2	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0005	412	2	2	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0006	412	1	0	0	1	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0007	412	1	1	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0008	412	1	0	0	0	0	1	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0009	412	1	1	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	a0010	412	1	0	1	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADVL_chr17_7214938_7230266	1/1	a0001	655	328	67	69	134	16	40	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0002	655	41	4	3	34	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0003	655	10	9	1	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0004	655	7	7	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0005	655	5	4	1	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0006	655	2	2	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0007	655	1	1	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0008	655	1	0	0	1	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0009	655	1	0	0	1	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0010	655	1	1	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	a0011	655	1	1	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACAN_chr15_88798436_88880353	1/1	a0001	2568	36	0	10	17	3	4	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0002	2587	27	2	7	13	1	4	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0003	2549	20	0	5	15	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0004	2568	19	0	2	16	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	a0005	2568	15	4	3	7	0	1	copy fasta	ACAN	chr15	88798436	88880353