JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BMP1_chr8_22160372_22206482	0/0	a0007	720	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0008	730	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0009	730	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0010	730	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	a0011	730	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22217326	1/1	a0001	986	355	86	63	151	15	38	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0002	986	33	3	0	27	0	3	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0003	986	9	5	2	0	1	1	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0004	986	2	0	0	0	0	2	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0005	986	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0006	986	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0007	986	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0008	986	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0009	986	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0010	986	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0011	986	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0012	986	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	a0013	986	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22217326
BMP2K_chr4_78771350_78921365	1/1	a0001	1161	91	36	10	32	1	10	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0002	1161	49	0	1	44	1	3	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0003	1160	14	11	1	2	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0004	1161	13	0	2	10	0	1	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0005	1162	13	13	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0006	1161	8	6	0	0	1	1	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0007	1162	4	4	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0008	1156	2	2	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0009	1158	2	0	0	2	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0010	1161	2	0	0	2	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0011	1156	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0012	923	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0013	1161	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0014	1162	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0015	1161	1	0	0	0	0	1	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	a0016	1161	1	0	0	0	1	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2_chr20_6762686_6785246	0/1	a0001	396	342	93	53	159	13	23	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	1/0	a0002	396	90	4	23	42	5	15	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	a0003	396	26	0	1	21	0	4	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	a0004	396	2	0	0	2	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	a0005	396	1	0	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	a0006	396	1	0	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	a0007	396	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	a0008	396	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP3_chr4_81025708_81062627	0/1	a0001	472	296	73	56	125	13	28	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0002	472	65	8	13	29	1	14	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0003	472	5	5	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0004	472	4	4	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0005	472	3	1	2	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0006	472	2	2	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0007	472	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0008	472	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627