JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNXB_chr6_32036153_32114338	0/0	a0016	4244	5	1	3	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0017	4133	5	5	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0018	4244	5	1	4	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0019	4244	4	0	3	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0020	4244	4	1	0	3	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0021	4244	4	0	0	0	0	4	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0022	4244	4	0	0	2	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0023	4244	3	0	0	2	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0024	4244	3	0	2	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0025	4244	3	3	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0026	4244	3	0	3	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0027	4244	3	3	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0028	4244	3	3	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0029	4244	3	0	0	3	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0030	4244	3	0	0	3	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0031	4244	2	0	2	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0032	4244	2	1	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0033	4244	2	2	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0034	4244	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0035	4244	2	1	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0036	4244	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0037	4244	2	0	0	0	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0038	4244	2	0	0	0	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0039	4244	2	0	0	0	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0040	4244	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0041	4244	2	0	0	0	2	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0042	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0043	4244	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0044	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0045	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0046	4244	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0047	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0048	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0049	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0050	4244	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0051	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0052	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0053	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0054	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0055	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0056	4244	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0057	4244	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0058	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0059	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0060	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0061	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0062	4244	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0063	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0064	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0065	4244	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338