JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TNXB_chr6_32036153_32114338	0/0	a0066	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0067	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0068	4244	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0069	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0070	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0071	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0072	4249	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0073	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0074	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0075	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0076	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0077	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0078	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0079	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0080	4244	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0081	1680	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0082	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0083	4214	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0084	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0085	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0086	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0087	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0088	4244	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0089	4244	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0090	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0091	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0092	4244	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0093	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0094	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0095	4244	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0096	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0097	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0098	4244	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	a0099	4244	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TOB1_chr17_50857223_50871354	1/1	a0001	345	411	94	76	185	14	40	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	a0002	269	8	4	0	4	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	a0003	16	1	0	0	1	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB2_chr22_41428494_41451801	1/1	a0001	344	356	88	61	160	11	34	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	a0002	344	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	a0003	344	1	0	0	0	1	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	a0004	344	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	a0005	344	1	0	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOE1_chr1_45335170_45348973	1/1	a0001	510	390	86	65	187	17	33	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	a0002	510	9	0	9	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	a0003	510	3	3	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	a0004	510	1	0	0	0	1	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	a0005	510	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	a0006	510	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	a0007	510	1	0	0	1	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	a0008	510	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973