JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TOE1_chr1_45335170_45348973	0/0	a0009	510	1	0	0	0	0	1	copy fasta	TOE1	chr1	45335170	45348973
TOGARAM1_chr14_44957190_45079431	1/1	a0001	1773	100	34	14	34	4	12	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0002	1773	38	33	3	0	1	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0003	1773	29	0	1	23	3	2	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0004	1773	3	3	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0005	1773	2	2	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0006	1773	2	2	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0007	1773	1	1	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0008	1773	1	0	0	0	0	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0009	1773	1	1	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	a0010	1773	1	0	0	1	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM2_chr2_28976298_29057230	0/0	a0001	1019	49	2	8	39	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	1/0	a0002	1019	34	8	5	12	0	8	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0003	1019	26	3	6	5	5	7	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0004	1019	19	1	8	0	4	6	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0005	1019	19	0	0	18	0	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0006	1019	11	5	3	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/1	a0007	1019	10	0	1	4	0	4	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0008	1019	10	4	4	0	1	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0009	1019	10	2	3	3	1	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0010	1019	9	0	2	6	1	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0011	1019	8	4	4	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0012	1019	8	0	0	8	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0013	1019	7	5	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0014	1019	6	0	0	5	0	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0015	1019	5	1	0	4	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0016	1019	5	0	1	0	0	4	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0017	1019	5	0	2	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0018	1019	5	0	0	5	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0019	1019	4	4	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0020	1019	4	0	0	4	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0021	1019	4	0	1	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0022	1023	4	4	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0023	161	3	3	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0024	1019	3	1	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0025	1019	3	3	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0026	1019	3	0	3	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0027	1019	3	0	0	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0028	1019	3	3	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0029	1019	2	0	0	0	0	2	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0030	1019	2	0	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0031	1019	2	2	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0032	1019	2	1	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0033	1019	2	2	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0034	1019	2	2	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0035	1019	2	0	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0036	1019	2	0	2	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0037	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0038	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0039	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230