JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TOGARAM2_chr2_28976298_29057230	0/0	a0040	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0041	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0042	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0043	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0044	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0045	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0046	1019	1	0	0	0	0	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0047	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0048	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0049	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0050	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0051	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0052	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0053	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0054	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0055	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0056	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0057	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0058	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0059	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0060	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0061	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0062	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0063	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0064	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0065	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0066	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0067	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0068	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0069	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0070	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0071	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0072	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0073	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0074	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0075	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0076	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0077	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0078	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0079	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0080	1019	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0081	1019	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	a0082	1019	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOLLIP_chr11_1269371_1314632	1/1	a0001	274	333	87	69	121	13	41	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0002	274	5	0	1	0	1	3	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0003	274	3	3	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0004	192	1	0	0	1	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0005	274	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0006	274	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0007	274	1	0	0	1	0	0	copy fasta	TOLLIP	chr11	1269371	1314632