JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TOLLIP_chr11_1269371_1314632	0/0	a0008	274	1	0	0	1	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0009	274	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	a0010	274	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOM1L1_chr17_54895852_54966956	1/1	a0001	476	388	89	70	179	12	36	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	a0002	476	1	1	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	a0003	476	1	1	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	a0004	476	1	0	0	1	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	a0005	476	1	1	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L2_chr17_17838511_17977400	1/1	a0001	507	238	83	56	74	8	15	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	a0002	507	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	a0003	507	1	0	0	0	0	1	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1_chr22_35294894_35352973	1/1	a0001	492	353	84	68	156	10	33	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	a0002	492	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	a0003	492	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	a0004	492	1	0	0	0	0	1	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	a0005	492	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	a0006	492	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOMM20L_chr14_58390930_58413702	1/1	a0001	152	359	89	55	163	10	40	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20L_chr14_58390930_58413702	0/0	a0002	152	1	1	0	0	0	0	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20L_chr14_58390930_58413702	0/0	a0003	152	1	0	0	1	0	0	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20L_chr14_58390930_58413702	0/0	a0004	152	1	0	1	0	0	0	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20_chr1_235104341_235133837	1/1	a0001	145	398	90	78	176	14	38	copy fasta	TOMM20	chr1	235104341	235133837
TOMM22_chr22_38676957_38690421	1/1	a0001	142	382	92	58	176	10	44	copy fasta	TOMM22	chr22	38676957	38690421
TOMM22_chr22_38676957_38690421	0/0	a0002	142	2	0	0	2	0	0	copy fasta	TOMM22	chr22	38676957	38690421
TOMM34_chr20_44937130_44965397	1/1	a0001	309	413	96	72	177	18	48	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	a0002	309	1	0	0	1	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM40L_chr1_161221060_161235746	1/1	a0001	308	444	90	78	208	16	50	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	a0002	308	1	0	0	1	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	a0003	308	1	0	0	1	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40_chr19_44886254_44908689	1/1	a0001	361	409	96	87	168	14	42	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	a0002	361	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	a0003	361	1	0	1	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	a0004	361	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM5_chr9_37583413_37597597	1/1	a0001	51	356	96	70	128	16	44	copy fasta	TOMM5	chr9	37583413	37597597
TOMM6_chr6_41782694_41794895	1/1	a0001	74	449	96	82	207	16	46	copy fasta	TOMM6	chr6	41782694	41794895
TOMM6_chr6_41782694_41794895	0/0	a0002	74	1	0	0	1	0	0	copy fasta	TOMM6	chr6	41782694	41794895
TOMM70_chr3_100358431_100406089	1/1	a0001	608	396	82	71	183	12	46	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	a0002	608	1	0	0	1	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	a0003	608	1	0	1	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM7_chr7_22807974_22827849	0/0	a0001	55	420	90	74	192	16	48	copy fasta	TOMM7	chr7	22807974	22827849
TOMT_chr11_72100924_72114596	1/1	a0001	258	395	93	73	178	8	41	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	a0002	258	1	0	0	1	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	a0003	258	1	0	0	1	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	a0004	258	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	a0005	258	1	0	0	0	0	1	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	a0006	258	1	0	1	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	a0007	258	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	a0008	258	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TONSL_chr8_144423775_144449440	0/0	a0001	1378	162	39	36	64	7	16	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	a0002	1378	137	27	24	58	5	23	copy fasta	TONSL	chr8	144423775	144449440