JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TOP2A_chr17_40383525_40422896	0/0	a0007	1531	1	0	0	1	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	a0008	1531	1	1	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2B_chr3_25592984_25669907	1/1	a0001	1626	257	57	66	99	8	25	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0002	1626	31	0	0	28	0	3	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0003	1626	7	6	1	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0004	1626	6	4	2	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0005	1626	3	0	3	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0006	1626	1	0	0	1	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0007	1626	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0008	1626	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0009	1626	1	0	0	1	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0010	1626	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	a0011	1626	1	0	0	1	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP3A_chr17_18266428_18319994	1/1	a0001	1001	353	72	69	160	12	38	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0002	1001	13	12	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0003	1001	6	6	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0004	1001	5	1	2	2	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0005	1001	2	0	0	2	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0006	1001	2	2	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0007	1001	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0008	1001	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0009	1001	1	0	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0010	1001	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0011	1001	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0012	1001	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	a0013	1001	1	0	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3B_chr22_21952025_21987787	0/0	a0001	862	303	82	54	121	11	35	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0002	862	37	13	10	9	1	4	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0003	862	1	0	0	0	0	1	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0004	862	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0005	862	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0006	862	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0007	862	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0008	862	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0009	862	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	a0010	862	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOPAZ1_chr3_44236886_44337098	0/1	a0001	1692	97	22	26	27	6	15	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0002	1692	79	44	18	4	7	6	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	1/0	a0003	1692	55	11	8	30	1	4	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0004	1692	5	5	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0005	1692	4	4	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0006	1692	2	0	1	0	0	1	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0007	1692	2	0	0	0	0	2	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0008	1692	2	0	2	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0009	1692	2	2	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0010	1692	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0011	1692	1	0	0	1	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0012	1692	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0013	1692	1	0	0	0	0	1	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0014	1692	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098