JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TOPAZ1_chr3_44236886_44337098	0/0	a0015	1692	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0016	1692	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0017	1692	1	0	1	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0018	1692	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	a0019	1692	1	0	0	0	0	1	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPBP1_chr3_133595238_133666941	0/0	a0001	1522	134	59	8	63	1	3	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	1/0	a0002	1522	124	19	30	58	3	13	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0003	1522	34	1	13	5	6	9	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0004	1522	17	3	11	0	2	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/1	a0005	1522	15	6	4	0	4	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0006	1522	4	0	0	4	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0007	1522	4	0	0	4	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0008	1522	2	0	0	0	2	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0009	1522	2	1	1	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0010	1522	1	0	0	0	0	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0011	1522	1	0	0	0	0	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0012	1522	1	0	1	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	a0013	1522	1	1	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPORS_chr9_32535544_32557586	1/1	a0001	1045	368	87	69	157	15	38	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	a0002	1045	2	2	0	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	a0003	1045	2	1	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	a0004	1045	1	0	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	a0005	1045	1	0	0	1	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	a0006	1045	1	0	0	0	1	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	a0007	1045	1	0	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOR1AIP1_chr1_179877285_179925076	1/0	a0001	583	147	62	21	49	7	7	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/1	a0002	583	117	22	25	53	2	14	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0003	583	11	1	6	0	3	1	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0004	583	8	7	0	0	0	1	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0005	583	2	0	0	2	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0006	583	1	0	0	0	0	1	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0007	583	1	0	0	1	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0008	583	1	0	0	1	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0009	583	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	a0010	583	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP2_chr1_179834976_179882803	1/1	a0001	470	276	89	54	106	12	13	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	a0002	470	1	0	0	0	0	1	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	a0003	470	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	a0004	470	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1AIP2_chr1_179834976_179882803	0/0	a0005	470	1	1	0	0	0	0	copy fasta	TOR1AIP2	chr1	179834976	179882803
TOR1A_chr9_129807942_129829136	1/1	a0001	332	346	87	58	149	12	38	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	a0002	332	35	1	14	11	1	8	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	a0003	332	1	0	0	0	1	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	a0004	332	1	0	0	1	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1A_chr9_129807942_129829136	0/0	a0005	332	1	0	0	1	0	0	copy fasta	TOR1A	chr9	129807942	129829136
TOR1B_chr9_129798184_129816281	1/1	a0001	336	373	85	66	160	16	44	copy fasta	TOR1B	chr9	129798184	129816281
TOR1B_chr9_129798184_129816281	0/0	a0002	336	1	1	0	0	0	0	copy fasta	TOR1B	chr9	129798184	129816281
TOR2A_chr9_127726524_127740294	0/1	a0001	321	350	84	68	137	14	46	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	a0002	321	5	5	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	1/0	a0003	321	3	0	0	0	2	0	copy fasta	TOR2A	chr9	127726524	127740294