JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TOR2A_chr9_127726524_127740294	0/0	a0004	321	1	0	0	1	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	a0005	321	1	1	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	a0006	321	1	1	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR2A_chr9_127726524_127740294	0/0	a0007	321	1	1	0	0	0	0	copy fasta	TOR2A	chr9	127726524	127740294
TOR3A_chr1_179077070_179100996	0/1	a0001	397	301	94	49	124	10	23	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	1/0	a0002	397	108	2	25	63	4	13	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	a0003	397	6	0	0	6	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	a0004	397	2	2	0	0	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR3A_chr1_179077070_179100996	0/0	a0005	397	1	0	0	1	0	0	copy fasta	TOR3A	chr1	179077070	179100996
TOR4A_chr9_137272726_137287641	1/1	a0001	423	382	88	71	163	18	40	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0002	423	13	1	5	7	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0003	423	5	5	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0004	423	3	0	0	3	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0005	423	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0006	423	1	0	0	1	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0007	423	1	0	0	0	0	1	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0008	423	1	0	0	0	0	1	copy fasta	TOR4A	chr9	137272726	137287641
TOR4A_chr9_137272726_137287641	0/0	a0009	423	1	1	0	0	0	0	copy fasta	TOR4A	chr9	137272726	137287641
TOX2_chr20_43909852_44074616	1/1	a0001	506	273	79	55	103	7	27	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	a0002	506	4	3	1	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	a0003	507	4	1	2	0	1	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	a0004	506	2	2	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	a0005	506	2	2	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	a0006	506	1	0	0	0	0	1	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	a0007	506	1	0	0	1	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX2_chr20_43909852_44074616	0/0	a0008	506	1	1	0	0	0	0	copy fasta	TOX2	chr20	43909852	44074616
TOX3_chr16_52431417_52552143	1/1	a0001	576	301	71	43	134	14	37	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	a0002	576	14	13	0	0	0	1	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	a0003	576	3	3	0	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	a0004	576	2	0	2	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX3_chr16_52431417_52552143	0/0	a0005	576	2	1	1	0	0	0	copy fasta	TOX3	chr16	52431417	52552143
TOX4_chr14_21472195_21504170	1/1	a0001	621	395	91	68	181	14	39	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	a0002	621	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	a0003	621	1	0	0	0	0	1	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	a0004	621	1	1	0	0	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	a0005	621	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX4_chr14_21472195_21504170	0/0	a0006	621	1	0	0	1	0	0	copy fasta	TOX4	chr14	21472195	21504170
TOX_chr8_58800412_59124147	1/1	a0001	526	222	76	38	78	2	26	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	a0002	526	1	0	1	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TOX_chr8_58800412_59124147	0/0	a0003	526	1	0	1	0	0	0	copy fasta	TOX	chr8	58800412	59124147
TP53AIP1_chr11_128930370_128947871	1/1	a0001	124	320	49	66	164	12	27	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0002	124	125	37	16	54	3	15	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0003	124	6	4	1	1	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0004	124	6	4	1	1	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0005	124	5	3	0	0	0	2	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0006	124	1	0	1	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0007	124	1	0	0	0	1	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0008	124	1	1	0	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53AIP1_chr11_128930370_128947871	0/0	a0009	124	1	0	1	0	0	0	copy fasta	TP53AIP1	chr11	128930370	128947871
TP53BP1_chr15_43398061_43498156	0/0	a0001	1977	133	53	11	57	1	11	copy fasta	TP53BP1	chr15	43398061	43498156