JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TP53BP1_chr15_43398061_43498156	1/1	a0002	1977	100	4	17	61	6	10	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0003	1977	29	12	7	0	3	7	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0004	1977	14	0	1	13	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0005	1977	6	5	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0006	1977	2	0	0	2	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0007	1977	2	0	2	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0008	1977	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0009	1977	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0010	1977	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0011	1977	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0012	1977	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0013	1977	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0014	1977	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0015	1977	1	0	0	0	0	1	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0016	1977	1	0	0	0	1	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0017	1977	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0018	1977	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0019	1977	1	0	0	0	1	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0020	1977	1	0	1	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0021	1977	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0022	1977	1	1	0	0	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP1_chr15_43398061_43498156	0/0	a0023	1977	1	0	0	1	0	0	copy fasta	TP53BP1	chr15	43398061	43498156
TP53BP2_chr1_223774893_223850947	1/1	a0001	1134	365	83	67	178	7	28	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	a0002	1134	9	1	2	3	1	2	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	a0003	1134	2	0	1	0	0	1	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	a0004	1134	1	1	0	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	a0005	1134	1	0	0	1	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	a0006	1134	1	1	0	0	0	0	copy fasta	TP53BP2	chr1	223774893	223850947
TP53BP2_chr1_223774893_223850947	0/0	a0007	1134	1	0	0	0	0	1	copy fasta	TP53BP2	chr1	223774893	223850947
TP53I11_chr11_44927348_44955883	1/1	a0001	189	419	98	76	183	16	44	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	a0002	189	2	0	0	2	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I11_chr11_44927348_44955883	0/0	a0003	81	1	0	0	1	0	0	copy fasta	TP53I11	chr11	44927348	44955883
TP53I13_chr17_29563701_29578157	1/1	a0001	393	404	94	79	161	18	50	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	a0002	393	1	0	1	0	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	a0003	393	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	a0004	393	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I13_chr17_29563701_29578157	0/0	a0005	393	1	0	0	1	0	0	copy fasta	TP53I13	chr17	29563701	29578157
TP53I3_chr2_24072433_24089834	1/1	a0001	332	345	85	65	135	18	40	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	a0002	332	1	0	1	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	a0003	332	1	0	0	1	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53I3_chr2_24072433_24089834	0/0	a0004	332	1	1	0	0	0	0	copy fasta	TP53I3	chr2	24072433	24089834
TP53INP1_chr8_94920972_94954378	1/1	a0001	240	359	93	62	150	12	40	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP1_chr8_94920972_94954378	0/0	a0002	240	1	1	0	0	0	0	copy fasta	TP53INP1	chr8	94920972	94954378
TP53INP2_chr20_34699344_34718436	1/1	a0001	220	401	87	67	187	16	42	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	a0002	220	2	1	1	0	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53INP2_chr20_34699344_34718436	0/0	a0003	220	1	0	0	1	0	0	copy fasta	TP53INP2	chr20	34699344	34718436
TP53RK_chr20_46679365_46694444	1/1	a0001	253	386	78	63	188	10	45	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	a0002	253	13	1	7	0	4	1	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	a0003	253	2	0	0	0	2	0	copy fasta	TP53RK	chr20	46679365	46694444
TP53RK_chr20_46679365_46694444	0/0	a0004	253	2	2	0	0	0	0	copy fasta	TP53RK	chr20	46679365	46694444