JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BMP3_chr4_81025708_81062627	0/0	a0009	472	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0010	472	1	0	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0011	472	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	1/0	a0012	472	1	0	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	a0013	472	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP4_chr14_53944736_53961825	1/0	a0001	408	325	79	51	156	9	29	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/1	a0002	408	125	15	33	54	7	15	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	a0003	408	2	2	0	0	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	a0004	408	1	0	0	1	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	a0005	408	1	0	0	1	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP5_chr6_55748653_55880590	1/1	a0001	454	309	88	51	121	12	35	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	a0002	454	3	0	1	0	0	2	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	a0003	454	3	3	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	a0004	454	2	2	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	a0005	286	1	0	0	0	0	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	a0006	454	1	0	0	1	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	a0007	454	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP6_chr6_7721099_7886728	1/1	a0001	513	199	65	51	64	6	11	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	a0002	513	71	10	15	28	4	14	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	a0003	514	27	7	1	16	0	3	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	a0004	513	7	7	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	a0005	513	1	0	0	0	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	a0006	513	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	a0007	514	1	0	0	0	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	a0008	513	1	0	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP7_chr20_57163753_57271641	1/1	a0001	431	270	88	62	70	14	34	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	a0002	431	2	2	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP8A_chr1_39486636_39534869	0/0	a0001	402	147	21	24	78	2	22	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/1	a0002	402	63	5	16	28	8	5	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0003	402	42	0	5	37	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0004	402	30	24	4	0	0	2	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0005	402	21	18	2	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0006	402	20	0	10	3	2	5	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	1/0	a0007	402	11	2	1	0	2	5	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0008	402	6	6	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0009	402	4	4	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0010	402	4	0	0	4	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0011	402	2	2	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0012	402	2	0	0	0	1	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0013	402	2	2	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0014	402	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0015	402	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0016	402	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0017	402	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0018	402	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0019	402	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0020	402	1	0	0	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	a0021	402	1	0	0	0	1	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8B_chr1_39752182_39793865	1/1	a0001	402	283	44	53	138	13	33	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	a0002	402	35	27	2	6	0	0	copy fasta	BMP8B	chr1	39752182	39793865