JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TPCN2_chr11_69043932_69095597	0/1	a0002	752	85	19	16	28	4	17	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0003	752	64	4	13	34	8	5	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0004	752	49	42	2	4	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0005	752	30	1	10	13	3	3	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0006	752	18	1	9	1	1	6	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0007	752	8	0	2	6	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0008	752	6	0	2	0	2	2	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0009	752	5	0	0	5	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0010	752	3	3	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0011	752	2	2	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0012	752	2	0	0	2	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0013	752	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0014	47	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0015	752	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0016	752	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0017	752	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0018	752	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0019	752	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0020	402	1	0	1	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0021	752	1	0	0	1	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0022	752	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0023	752	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0024	752	1	0	0	0	0	1	copy fasta	TPCN2	chr11	69043932	69095597
TPCN2_chr11_69043932_69095597	0/0	a0025	752	1	1	0	0	0	0	copy fasta	TPCN2	chr11	69043932	69095597
TPD52L1_chr6_125148773_125269407	1/1	a0001	204	315	84	56	139	8	26	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	a0002	204	4	4	0	0	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L1_chr6_125148773_125269407	0/0	a0003	204	1	0	0	1	0	0	copy fasta	TPD52L1	chr6	125148773	125269407
TPD52L2_chr20_63860270_63896538	1/1	a0001	206	366	81	72	155	14	42	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	a0002	206	1	1	0	0	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L2_chr20_63860270_63896538	0/0	a0003	206	1	0	0	1	0	0	copy fasta	TPD52L2	chr20	63860270	63896538
TPD52L3_chr9_6323375_6336891	0/0	a0001	136	368	75	73	166	14	40	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	1/1	a0002	136	26	16	6	0	0	2	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	a0003	136	1	0	1	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52L3_chr9_6323375_6336891	0/0	a0004	136	1	1	0	0	0	0	copy fasta	TPD52L3	chr9	6323375	6336891
TPD52_chr8_80029745_80176564	1/1	a0001	207	224	84	43	62	8	25	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	a0002	207	2	0	2	0	0	0	copy fasta	TPD52	chr8	80029745	80176564
TPD52_chr8_80029745_80176564	0/0	a0003	207	2	0	1	0	0	1	copy fasta	TPD52	chr8	80029745	80176564
TPGS1_chr19_502497_524654	0/0	a0000	0	15	4	3	7	0	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	1/1	a0001	290	318	90	63	114	15	34	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	a0002	290	10	0	2	6	1	1	copy fasta	TPGS1	chr19	502497	524654
TPGS1_chr19_502497_524654	0/0	a0003	290	1	0	0	1	0	0	copy fasta	TPGS1	chr19	502497	524654
TPGS2_chr18_36789108_36834002	1/1	a0001	300	316	79	60	115	16	44	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	a0002	300	18	0	0	18	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	a0003	300	1	1	0	0	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPGS2_chr18_36789108_36834002	0/0	a0004	300	1	0	0	1	0	0	copy fasta	TPGS2	chr18	36789108	36834002
TPH1_chr11_18012555_18051269	1/1	a0001	444	395	92	70	177	16	38	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	a0002	444	1	0	0	1	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	a0003	444	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH1_chr11_18012555_18051269	0/0	a0004	444	1	1	0	0	0	0	copy fasta	TPH1	chr11	18012555	18051269
TPH2_chr12_71933845_72037440	1/1	a0001	490	326	94	65	125	12	28	copy fasta	TPH2	chr12	71933845	72037440