JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TPH2_chr12_71933845_72037440	0/0	a0002	490	3	0	0	3	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	a0003	490	2	0	0	0	2	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	a0004	490	2	1	1	0	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPH2_chr12_71933845_72037440	0/0	a0005	490	1	1	0	0	0	0	copy fasta	TPH2	chr12	71933845	72037440
TPI1_chr12_6862531_6875948	0/0	a0001	249	382	86	68	168	16	44	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	a0002	249	1	1	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPI1_chr12_6862531_6875948	0/0	a0003	249	1	1	0	0	0	0	copy fasta	TPI1	chr12	6862531	6875948
TPK1_chr7_144446941_144841053	1/1	a0001	243	118	74	22	8	2	10	copy fasta	TPK1	chr7	144446941	144841053
TPM1_chr15_63037747_63071178	1/1	a0001	284	400	100	72	168	14	44	copy fasta	TPM1	chr15	63037747	63071178
TPM2_chr9_35677932_35694925	1/1	a0001	284	434	95	74	199	16	48	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	a0002	58	1	1	0	0	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM2_chr9_35677932_35694925	0/0	a0003	284	1	0	0	1	0	0	copy fasta	TPM2	chr9	35677932	35694925
TPM3_chr1_154156813_154197100	1/1	a0001	285	370	94	68	156	12	38	copy fasta	TPM3	chr1	154156813	154197100
TPM3_chr1_154156813_154197100	0/0	a0002	285	2	2	0	0	0	0	copy fasta	TPM3	chr1	154156813	154197100
TPM4_chr19_16071495_16108002	1/1	a0001	248	374	89	71	150	18	44	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	a0002	248	3	2	1	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPM4_chr19_16071495_16108002	0/0	a0003	248	1	1	0	0	0	0	copy fasta	TPM4	chr19	16071495	16108002
TPMT_chr6_18123311_18160077	1/1	a0001	245	415	87	68	196	16	46	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	a0002	245	12	7	1	4	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	a0003	245	7	0	7	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	a0004	245	2	2	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPMT_chr6_18123311_18160077	0/0	a0005	245	2	2	0	0	0	0	copy fasta	TPMT	chr6	18123311	18160077
TPO_chr2_1408463_1548673	0/0	a0000	0	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0001	933	45	2	14	21	3	5	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0002	933	20	7	7	5	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0003	933	15	2	0	9	1	3	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/1	a0004	933	12	2	2	2	1	4	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	1/0	a0005	933	6	0	4	0	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0006	933	5	1	1	2	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0007	933	5	2	0	3	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0008	933	5	4	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0009	933	4	4	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0010	933	3	0	0	3	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0011	933	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0012	933	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0013	933	1	0	0	0	0	1	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0014	933	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0015	933	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0016	933	1	0	1	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0017	933	1	0	0	1	0	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0018	933	1	0	0	0	1	0	copy fasta	TPO	chr2	1408463	1548673
TPO_chr2_1408463_1548673	0/0	a0019	933	1	1	0	0	0	0	copy fasta	TPO	chr2	1408463	1548673
TPP1_chr11_6607768_6624422	1/1	a0001	563	413	79	85	190	16	41	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0002	563	4	3	1	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0003	563	4	4	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0004	563	3	3	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0005	563	3	3	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0006	563	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0007	563	1	0	0	0	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0008	563	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422