JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TPP1_chr11_6607768_6624422	0/0	a0009	563	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0010	563	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0011	563	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0012	563	1	0	0	0	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0013	563	1	0	0	0	0	1	copy fasta	TPP1	chr11	6607768	6624422
TPP1_chr11_6607768_6624422	0/0	a0014	563	1	1	0	0	0	0	copy fasta	TPP1	chr11	6607768	6624422
TPP2_chr13_102591986_102684958	1/1	a0001	1262	361	72	74	163	10	40	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	a0002	1262	2	2	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	a0003	1262	1	0	0	1	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	a0004	1262	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPP2_chr13_102591986_102684958	0/0	a0005	1262	1	1	0	0	0	0	copy fasta	TPP2	chr13	102591986	102684958
TPPP2_chr14_21025217_21037815	1/1	a0001	170	383	90	60	176	16	39	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	a0002	170	87	2	21	55	2	7	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	a0003	164	7	7	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	a0004	170	1	0	0	1	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	a0005	170	1	1	0	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	a0006	170	1	0	1	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	a0007	170	1	0	1	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP2_chr14_21025217_21037815	0/0	a0008	170	1	0	1	0	0	0	copy fasta	TPPP2	chr14	21025217	21037815
TPPP3_chr16_67384809_67398498	1/1	a0001	176	299	87	58	98	12	42	copy fasta	TPPP3	chr16	67384809	67398498
TPPP3_chr16_67384809_67398498	0/0	a0002	176	1	1	0	0	0	0	copy fasta	TPPP3	chr16	67384809	67398498
TPPP_chr5_654862_698352	1/0	a0001	219	397	84	76	178	16	42	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	a0002	219	11	10	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPPP_chr5_654862_698352	0/0	a0003	219	1	0	1	0	0	0	copy fasta	TPPP	chr5	654862	698352
TPRA1_chr3_127566232_127595733	1/1	a0001	373	418	95	71	185	17	48	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	a0002	373	5	0	0	5	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	a0003	373	2	0	1	0	1	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRA1_chr3_127566232_127595733	0/0	a0004	373	1	1	0	0	0	0	copy fasta	TPRA1	chr3	127566232	127595733
TPRG1L_chr1_3620015_3635127	1/1	a0001	272	400	97	80	159	18	44	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	a0002	272	1	1	0	0	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	a0003	272	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	a0004	272	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1L_chr1_3620015_3635127	0/0	a0005	272	1	0	0	1	0	0	copy fasta	TPRG1L	chr1	3620015	3635127
TPRG1_chr3_189166971_189330304	1/1	a0001	275	287	79	56	106	8	36	copy fasta	TPRG1	chr3	189166971	189330304
TPRG1_chr3_189166971_189330304	0/0	a0002	275	1	1	0	0	0	0	copy fasta	TPRG1	chr3	189166971	189330304
TPRKB_chr2_73724873_73742345	1/1	a0001	175	427	96	81	188	14	46	copy fasta	TPRKB	chr2	73724873	73742345
TPRKB_chr2_73724873_73742345	0/0	a0002	175	1	0	1	0	0	0	copy fasta	TPRKB	chr2	73724873	73742345
TPRN_chr9_137186619_137205741	1/0	a0001	711	266	46	59	134	9	17	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/1	a0002	711	68	17	13	9	5	23	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0003	711	8	8	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0004	711	6	0	0	6	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0005	712	5	0	0	2	0	3	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0006	711	4	4	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0007	710	3	2	0	1	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0008	711	3	3	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0009	711	2	2	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0010	711	2	2	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0011	711	1	1	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0012	711	1	0	0	1	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0013	710	1	0	0	0	0	1	copy fasta	TPRN	chr9	137186619	137205741