JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TPRN_chr9_137186619_137205741	0/0	a0014	711	1	0	0	1	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRN_chr9_137186619_137205741	0/0	a0015	711	1	1	0	0	0	0	copy fasta	TPRN	chr9	137186619	137205741
TPRX1_chr19_47796232_47809551	1/0	a0001	466	226	33	38	127	4	23	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0002	466	97	46	18	19	5	9	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0003	466	23	1	3	15	0	4	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0004	454	14	1	4	0	6	3	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0005	462	10	0	3	5	0	2	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/1	a0006	462	8	0	5	0	0	2	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0007	466	3	3	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0008	470	3	0	0	3	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0009	462	3	3	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0010	466	2	0	0	0	0	2	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0011	450	2	0	1	0	1	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0012	462	2	2	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0013	466	2	0	2	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0014	462	2	2	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0015	466	1	0	0	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0016	466	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0017	466	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0018	462	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0019	454	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0020	482	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0021	466	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0022	466	1	0	0	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0023	466	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0024	466	1	0	1	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0025	466	1	0	0	0	0	1	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0026	474	1	1	0	0	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX1_chr19_47796232_47809551	0/0	a0027	466	1	0	0	1	0	0	copy fasta	TPRX1	chr19	47796232	47809551
TPRX2_chr19_47854235_47866721	0/1	a0001	301	205	4	53	116	7	24	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	1/0	a0002	301	198	86	30	57	6	18	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	a0003	301	3	0	0	3	0	0	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	a0004	301	2	0	1	0	0	1	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	a0005	301	1	0	0	0	0	1	copy fasta	TPRX2	chr19	47854235	47866721
TPRX2_chr19_47854235_47866721	0/0	a0006	301	1	0	0	0	1	0	copy fasta	TPRX2	chr19	47854235	47866721
TPR_chr1_186306652_186380253	1/0	a0001	2363	294	76	60	121	9	27	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0002	2363	44	2	5	30	3	4	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/1	a0003	2363	32	3	10	12	1	5	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0004	2363	12	0	0	12	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0005	2363	6	0	5	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0006	2363	4	0	0	4	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0007	2363	3	0	0	3	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0008	2363	2	2	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0009	2363	2	2	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0010	2363	2	0	1	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0011	2363	1	0	0	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0012	2363	1	0	0	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0013	2363	1	1	0	0	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0014	2363	1	0	0	0	1	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0015	2363	1	0	1	0	0	0	copy fasta	TPR	chr1	186306652	186380253