JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TPR_chr1_186306652_186380253	0/0	a0016	2363	1	0	0	1	0	0	copy fasta	TPR	chr1	186306652	186380253
TPR_chr1_186306652_186380253	0/0	a0017	2363	1	0	0	0	0	1	copy fasta	TPR	chr1	186306652	186380253
TPSAB1_chr16_1235705_1247554	0/0	a0000	0	16	1	0	15	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0001	275	109	18	11	64	5	11	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	1/1	a0002	275	107	42	33	18	3	9	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0003	275	13	1	1	11	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0004	275	12	0	7	0	3	2	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0005	275	7	0	0	7	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0006	275	5	0	4	0	1	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0007	275	5	0	2	2	0	1	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0008	275	4	4	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0009	275	2	0	0	2	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0010	275	2	2	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0011	275	1	0	0	0	0	1	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0012	275	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0013	275	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0014	275	1	1	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0015	275	1	0	0	1	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0016	275	1	1	0	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0017	275	1	0	1	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSAB1_chr16_1235705_1247554	0/0	a0018	275	1	0	1	0	0	0	copy fasta	TPSAB1	chr16	1235705	1247554
TPSB2_chr16_1223336_1235184	0/0	a0001	275	188	35	26	104	9	14	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0002	275	69	24	20	18	2	5	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	1/0	a0003	275	26	6	3	3	2	11	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/1	a0004	165	24	3	14	0	1	5	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0005	275	16	10	4	0	0	2	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0006	275	3	3	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0007	275	3	0	0	3	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0008	275	2	2	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0009	275	2	1	1	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0010	275	2	0	0	2	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0011	275	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0012	227	1	0	1	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0013	275	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0014	275	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0015	275	1	0	0	0	0	1	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0016	275	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0017	275	1	0	1	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0018	275	1	1	0	0	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSB2_chr16_1223336_1235184	0/0	a0019	275	1	0	0	1	0	0	copy fasta	TPSB2	chr16	1223336	1235184
TPSD1_chr16_1251069_1264008	0/0	a0001	242	125	15	17	72	4	17	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0002	52	48	22	17	7	0	2	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	1/1	a0003	242	43	10	14	4	4	9	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0004	52	24	10	8	2	2	2	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0005	242	16	1	9	0	2	4	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0006	242	6	6	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0007	242	3	3	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0008	242	2	2	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0009	242	1	1	0	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSD1_chr16_1251069_1264008	0/0	a0010	242	1	0	1	0	0	0	copy fasta	TPSD1	chr16	1251069	1264008