JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TPSD1_chr16_1251069_1264008	0/0	a0011	242	1	0	0	1	0	0	copy fasta	TPSD1	chr16	1251069	1264008
TPSG1_chr16_1216651_1230268	0/0	a0001	321	212	36	32	119	8	17	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0002	321	70	25	14	10	4	17	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0003	321	39	4	8	21	2	4	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	1/1	a0004	321	24	3	13	0	1	5	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0005	321	17	2	2	11	0	2	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0006	321	7	7	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0007	321	4	4	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0008	321	3	1	0	2	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0009	321	2	0	1	0	0	1	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0010	321	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0011	321	1	0	0	1	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0012	321	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0013	50	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0014	321	1	0	0	0	1	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0015	321	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0016	321	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0017	321	1	0	0	1	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0018	321	1	0	1	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0019	321	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0020	321	1	1	0	0	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPSG1_chr16_1216651_1230268	0/0	a0021	321	1	0	0	1	0	0	copy fasta	TPSG1	chr16	1216651	1230268
TPST1_chr7_66200334_66365443	1/1	a0001	370	345	77	62	166	14	24	copy fasta	TPST1	chr7	66200334	66365443
TPST1_chr7_66200334_66365443	0/0	a0002	370	1	1	0	0	0	0	copy fasta	TPST1	chr7	66200334	66365443
TPST2_chr22_26516996_26595132	1/1	a0001	377	372	87	64	170	13	36	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	a0002	130	26	6	6	12	0	2	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	a0003	377	1	0	0	0	1	0	copy fasta	TPST2	chr22	26516996	26595132
TPST2_chr22_26516996_26595132	0/0	a0004	377	1	1	0	0	0	0	copy fasta	TPST2	chr22	26516996	26595132
TPT1_chr13_45328471_45346183	1/1	a0001	172	368	84	78	154	14	36	copy fasta	TPT1	chr13	45328471	45346183
TPTE2_chr13_19417877_19566532	0/1	a0001	522	187	62	43	44	14	23	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	1/0	a0002	522	28	24	3	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	a0003	522	2	2	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	a0004	522	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	a0005	522	1	0	0	0	0	1	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	a0006	522	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	a0007	522	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE2_chr13_19417877_19566532	0/0	a0008	522	1	1	0	0	0	0	copy fasta	TPTE2	chr13	19417877	19566532
TPTE_chr21_10516583_10610716	0/0	a0001	551	98	21	16	45	4	12	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0002	551	41	0	5	33	1	2	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0003	551	27	1	4	19	0	3	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0004	551	13	0	9	0	1	3	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0005	551	11	3	2	4	0	2	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0006	551	3	0	0	3	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0007	551	2	0	0	2	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0008	551	2	2	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0009	551	1	1	0	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0010	551	1	0	1	0	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0011	551	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0012	551	1	0	0	1	0	0	copy fasta	TPTE	chr21	10516583	10610716
TPTE_chr21_10516583_10610716	0/0	a0013	551	1	0	1	0	0	0	copy fasta	TPTE	chr21	10516583	10610716